Factsheet for VIT_08s0007g08150.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g080310.1.1	Tomato	nucleus	22.3	87.67
CDY33815	Canola	nucleus	28.57	71.3
KRG95297	Soybean	nucleus	63.76	64.89
KRG93709	Soybean	nucleus	51.92	62.08
KRH66977	Soybean	nucleus	61.32	61.97
Zm00001d043409_P001	Maize	nucleus	26.83	61.6
Bra014617.1-P	Field mustard	nucleus	54.01	59.85
KRH16554	Soybean	nucleus	54.01	59.85
KRG93713	Soybean	nucleus	56.79	59.71
CDX88955	Canola	nucleus	53.66	59.23
CDY06088	Canola	nucleus	55.4	58.89
CDX72012	Canola	nucleus	55.75	58.61
AT3G57600.1	Thale cress	nucleus	56.45	58.48
Bra007341.1-P	Field mustard	nucleus	54.7	58.15
KRH71963	Soybean	nucleus	59.23	55.02
CDY52095	Canola	nucleus	50.87	54.89
PGSC0003DMT400060970	Potato	nucleus	59.58	54.63
KRH33104	Soybean	nucleus	57.49	51.72
Os03t0174400-00	Rice	nucleus	49.13	44.34
KXG40072	Sorghum	nucleus	47.39	43.04
Zm00001d027870_P001	Maize	nucleus	47.04	42.06
GSMUA_Achr3P29800_001	Banana	mitochondrion	27.53	42.02
Zm00001d048296_P001	Maize	nucleus	44.95	42.02
TraesCS4B01G290100.1	Wheat	nucleus	45.64	41.59
TraesCS4D01G289200.1	Wheat	nucleus	45.99	41.38
TraesCS4A01G013600.1	Wheat	nucleus	45.99	41.25
Zm00001d048297_P001	Maize	nucleus	44.6	39.75
CDY33814	Canola	nucleus	11.15	36.78
GSMUA_Achr7P27150_001	Banana	nucleus	32.75	36.15
VIT_18s0001g13320.t01	Wine grape	nucleus	23.34	33.33
VIT_13s0067g01400.t01	Wine grape	nucleus	23.69	22.22
VIT_13s0067g01960.t01	Wine grape	nucleus	26.48	21.41

Protein Annotations

EntrezGene:100252184	wikigene:100252184	MapMan:15.5.7.2	Gene3D:3.30.730.10	UniProt:A5B053	EMBL:AM442061
InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:CAN80643	ProteinID:CAN80643.1	ProteinID:CCB55150	ProteinID:CCB55150.1
InterPro:DNA-bd_dom_sf	EMBL:FN595991	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	GO:GO:0044212	GO:GO:0045893	InterPro:IPR001471	InterPro:IPR036955	EntrezGene:LOC100252184
wikigene:LOC100252184	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF3
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0001523EAA	ArrayExpress:VIT_08s0007g08150	EnsemblPlantsGene:VIT_08s0007g08150	EnsemblPlants:VIT_08s0007g08150.t01
RefSeq:XP_002277662	RefSeq:XP_002277662.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:21518702..21520332

Molecular Weight (calculated)

32411.5 Da

IEP (calculated)

5.483

GRAVY (calculated)

-0.938

Length

287 amino acids

Sequence
(BLAST)

001: MENNRKSPLK PWKKGPTRGK GGPQNATCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA TAEEAAMAYD EAARRLYGPD AYLNLPHLQS NFNPSNKSQK
101: LKWFPSKNFI SMFPSCGLLN INAQPSVHVI HQRLQELKKN GVLNQSSSSS SSSCDSKTDA QNMNDKAPNK THESPRTNNK DVEFSSEQIP EEREEKPQID
201: LNEFLQQLGI LKDECQSEGS NAAEGFAAPE SSLKDDDELV GFAEESFNWD ALIEMRGIED HQGTDASSFQ GYGMYEEPAF PPSIWNF

Best Arabidopsis Sequence Match ( AT3G57600.1 )
(BLAST)

001: MEKSSSMKQW KKGPARGKGG PQNALCQYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA EEAAMAYDEA ALKLYGHDAY LNLPHLQRNT RPSLSNSQRF
101: KWVPSRKFIS MFPSCGMLNV NAQPSVHIIQ QRLEELKKTG LLSQSYSSSS SSTESKTNTS FLDEKTSKGE TDNMFEGGDQ KKPEIDLTEF LQQLGILKDE
201: NEAEPSEVAE CHSPPPWNEQ EETGSPFRTE NFSWDTLIEM PRSETTTMQF DSSNFGSYDF EDDVSFPSIW DYYGSLD

Arabidopsis Description

DREB2FDehydration-responsive element-binding protein 2F [Source:UniProtKB/Swiss-Prot;Acc:Q9SVX5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.