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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc10g080310.1.1 Tomato nucleus 23.0 98.63
CDY33815 Canola nucleus 26.52 72.17
Zm00001d043409_P001 Maize nucleus 24.92 62.4
VIT_08s0007g08150.t01 Wine grape nucleus 54.63 59.58
KRG95297 Soybean nucleus 50.48 56.03
KRH66977 Soybean nucleus 50.16 55.28
KRG93709 Soybean nucleus 39.94 52.08
KRH16554 Soybean nucleus 42.81 51.74
Bra014617.1-P Field mustard nucleus 42.49 51.35
CDY06088 Canola nucleus 44.09 51.11
KRG93713 Soybean nucleus 44.41 50.92
CDX88955 Canola nucleus 41.85 50.38
Bra007341.1-P Field mustard nucleus 43.45 50.37
CDX72012 Canola nucleus 43.77 50.18
KRH71963 Soybean nucleus 49.52 50.16
AT3G57600.1 Thale cress nucleus 42.81 48.38
KRH33104 Soybean nucleus 48.88 47.96
CDY52095 Canola nucleus 39.94 46.99
PGSC0003DMT400041067 Potato nucleus 16.93 44.92
PGSC0003DMT400073853 Potato nucleus 21.73 42.24
GSMUA_Achr3P29800_001 Banana mitochondrion 24.92 41.49
KXG40072 Sorghum nucleus 41.53 41.14
Os03t0174400-00 Rice nucleus 41.21 40.57
TraesCS4B01G290100.1 Wheat nucleus 40.26 40.0
Zm00001d048297_P001 Maize nucleus 40.89 39.75
Zm00001d027870_P001 Maize nucleus 40.58 39.56
Zm00001d048296_P001 Maize nucleus 38.66 39.41
TraesCS4D01G289200.1 Wheat nucleus 39.94 39.19
TraesCS4A01G013600.1 Wheat nucleus 39.62 38.75
GSMUA_Achr7P27150_001 Banana nucleus 30.03 36.15
CDY33814 Canola nucleus 7.03 25.29
PGSC0003DMT400009506 Potato nucleus 20.77 24.81
PGSC0003DMT400061541 Potato nucleus 23.64 23.12
PGSC0003DMT400085168 Potato nucleus 19.81 21.38
PGSC0003DMT400092312 Potato nucleus 20.13 20.06
PGSC0003DMT400069733 Potato nucleus 25.56 19.56
PGSC0003DMT400041064 Potato nucleus 22.36 15.32
PGSC0003DMT400041065 Potato nucleus 17.89 12.79
Protein Annotations
EntrezGene:102589787MapMan:15.5.7.2Gene3D:3.30.730.10InterPro:AP2/ERF_domInterPro:AP2/ERF_dom_sfInterPro:DNA-bd_dom_sf
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR001471InterPro:IPR036955
UniProt:M1C6S8PFAM:PF00847EnsemblPlantsGene:PGSC0003DMG400023717PGSC:PGSC0003DMG400023717EnsemblPlants:PGSC0003DMT400060970PRINTS:PR00367
PFscan:PS51032PANTHER:PTHR31241PANTHER:PTHR31241:SF3SMART:SM00380SUPFAM:SSF54171UniParc:UPI000295A94C
RefSeq:XP_015165887.1SEG:seg::::
Description
AP2/ERF domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400023717]
Coordinates
chr10:-:57640529..57641794
Molecular Weight (calculated)
35353.0 Da
IEP (calculated)
6.611
GRAVY (calculated)
-0.828
Length
313 amino acids
Sequence
(BLAST)
001: MDSYKRNPLK PWKKGPARGK GGPQNALCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA TAEEAAMAYD EAARRLYGPD AYLNLPHMRA NFNPLNKSQK
101: FKWFSSTNNF VSSLIPNTTG LLNLSAQPNV HVIHQRLQEL KRAEAAAATA SSSSSSISDL PKNGTQNYSK LQPEYLTMTS PQVMIKEKED EFSSHNNVAV
201: RGDQAEKPQI DLNEFLQQIG IMKRDDHQQQ PPDKNQDHDH NNNNSISSFT ESGVSLKDDS SIAHLFGDTT SYNWDTLGAI TGIEEDHEVA AEEANSFYNV
301: NDELMFPSSI WNF
Best Arabidopsis Sequence Match ( AT3G57600.1 )
(BLAST)
001: MEKSSSMKQW KKGPARGKGG PQNALCQYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA EEAAMAYDEA ALKLYGHDAY LNLPHLQRNT RPSLSNSQRF
101: KWVPSRKFIS MFPSCGMLNV NAQPSVHIIQ QRLEELKKTG LLSQSYSSSS SSTESKTNTS FLDEKTSKGE TDNMFEGGDQ KKPEIDLTEF LQQLGILKDE
201: NEAEPSEVAE CHSPPPWNEQ EETGSPFRTE NFSWDTLIEM PRSETTTMQF DSSNFGSYDF EDDVSFPSIW DYYGSLD
Arabidopsis Description
DREB2FDehydration-responsive element-binding protein 2F [Source:UniProtKB/Swiss-Prot;Acc:Q9SVX5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.