Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc10g080310.1.1 | Tomato | nucleus | 23.0 | 98.63 |
CDY33815 | Canola | nucleus | 26.52 | 72.17 |
Zm00001d043409_P001 | Maize | nucleus | 24.92 | 62.4 |
VIT_08s0007g08150.t01 | Wine grape | nucleus | 54.63 | 59.58 |
KRG95297 | Soybean | nucleus | 50.48 | 56.03 |
KRH66977 | Soybean | nucleus | 50.16 | 55.28 |
KRG93709 | Soybean | nucleus | 39.94 | 52.08 |
KRH16554 | Soybean | nucleus | 42.81 | 51.74 |
Bra014617.1-P | Field mustard | nucleus | 42.49 | 51.35 |
CDY06088 | Canola | nucleus | 44.09 | 51.11 |
KRG93713 | Soybean | nucleus | 44.41 | 50.92 |
CDX88955 | Canola | nucleus | 41.85 | 50.38 |
Bra007341.1-P | Field mustard | nucleus | 43.45 | 50.37 |
CDX72012 | Canola | nucleus | 43.77 | 50.18 |
KRH71963 | Soybean | nucleus | 49.52 | 50.16 |
AT3G57600.1 | Thale cress | nucleus | 42.81 | 48.38 |
KRH33104 | Soybean | nucleus | 48.88 | 47.96 |
CDY52095 | Canola | nucleus | 39.94 | 46.99 |
PGSC0003DMT400041067 | Potato | nucleus | 16.93 | 44.92 |
PGSC0003DMT400073853 | Potato | nucleus | 21.73 | 42.24 |
GSMUA_Achr3P29800_001 | Banana | mitochondrion | 24.92 | 41.49 |
KXG40072 | Sorghum | nucleus | 41.53 | 41.14 |
Os03t0174400-00 | Rice | nucleus | 41.21 | 40.57 |
TraesCS4B01G290100.1 | Wheat | nucleus | 40.26 | 40.0 |
Zm00001d048297_P001 | Maize | nucleus | 40.89 | 39.75 |
Zm00001d027870_P001 | Maize | nucleus | 40.58 | 39.56 |
Zm00001d048296_P001 | Maize | nucleus | 38.66 | 39.41 |
TraesCS4D01G289200.1 | Wheat | nucleus | 39.94 | 39.19 |
TraesCS4A01G013600.1 | Wheat | nucleus | 39.62 | 38.75 |
GSMUA_Achr7P27150_001 | Banana | nucleus | 30.03 | 36.15 |
CDY33814 | Canola | nucleus | 7.03 | 25.29 |
PGSC0003DMT400009506 | Potato | nucleus | 20.77 | 24.81 |
PGSC0003DMT400061541 | Potato | nucleus | 23.64 | 23.12 |
PGSC0003DMT400085168 | Potato | nucleus | 19.81 | 21.38 |
PGSC0003DMT400092312 | Potato | nucleus | 20.13 | 20.06 |
PGSC0003DMT400069733 | Potato | nucleus | 25.56 | 19.56 |
PGSC0003DMT400041064 | Potato | nucleus | 22.36 | 15.32 |
PGSC0003DMT400041065 | Potato | nucleus | 17.89 | 12.79 |
Protein Annotations
EntrezGene:102589787 | MapMan:15.5.7.2 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
UniProt:M1C6S8 | PFAM:PF00847 | EnsemblPlantsGene:PGSC0003DMG400023717 | PGSC:PGSC0003DMG400023717 | EnsemblPlants:PGSC0003DMT400060970 | PRINTS:PR00367 |
PFscan:PS51032 | PANTHER:PTHR31241 | PANTHER:PTHR31241:SF3 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000295A94C |
RefSeq:XP_015165887.1 | SEG:seg | : | : | : | : |
Description
AP2/ERF domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400023717]
Coordinates
chr10:-:57640529..57641794
Molecular Weight (calculated)
35353.0 Da
IEP (calculated)
6.611
GRAVY (calculated)
-0.828
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSYKRNPLK PWKKGPARGK GGPQNALCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA TAEEAAMAYD EAARRLYGPD AYLNLPHMRA NFNPLNKSQK
101: FKWFSSTNNF VSSLIPNTTG LLNLSAQPNV HVIHQRLQEL KRAEAAAATA SSSSSSISDL PKNGTQNYSK LQPEYLTMTS PQVMIKEKED EFSSHNNVAV
201: RGDQAEKPQI DLNEFLQQIG IMKRDDHQQQ PPDKNQDHDH NNNNSISSFT ESGVSLKDDS SIAHLFGDTT SYNWDTLGAI TGIEEDHEVA AEEANSFYNV
301: NDELMFPSSI WNF
101: FKWFSSTNNF VSSLIPNTTG LLNLSAQPNV HVIHQRLQEL KRAEAAAATA SSSSSSISDL PKNGTQNYSK LQPEYLTMTS PQVMIKEKED EFSSHNNVAV
201: RGDQAEKPQI DLNEFLQQIG IMKRDDHQQQ PPDKNQDHDH NNNNSISSFT ESGVSLKDDS SIAHLFGDTT SYNWDTLGAI TGIEEDHEVA AEEANSFYNV
301: NDELMFPSSI WNF
001: MEKSSSMKQW KKGPARGKGG PQNALCQYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA EEAAMAYDEA ALKLYGHDAY LNLPHLQRNT RPSLSNSQRF
101: KWVPSRKFIS MFPSCGMLNV NAQPSVHIIQ QRLEELKKTG LLSQSYSSSS SSTESKTNTS FLDEKTSKGE TDNMFEGGDQ KKPEIDLTEF LQQLGILKDE
201: NEAEPSEVAE CHSPPPWNEQ EETGSPFRTE NFSWDTLIEM PRSETTTMQF DSSNFGSYDF EDDVSFPSIW DYYGSLD
101: KWVPSRKFIS MFPSCGMLNV NAQPSVHIIQ QRLEELKKTG LLSQSYSSSS SSTESKTNTS FLDEKTSKGE TDNMFEGGDQ KKPEIDLTEF LQQLGILKDE
201: NEAEPSEVAE CHSPPPWNEQ EETGSPFRTE NFSWDTLIEM PRSETTTMQF DSSNFGSYDF EDDVSFPSIW DYYGSLD
Arabidopsis Description
DREB2FDehydration-responsive element-binding protein 2F [Source:UniProtKB/Swiss-Prot;Acc:Q9SVX5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.