Factsheet for TraesCS4B01G290100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G289200.1	Wheat	nucleus	93.02	91.85
TraesCS4A01G013600.1	Wheat	nucleus	92.7	91.25
Solyc10g080310.1.1	Tomato	nucleus	17.78	76.71
Os03t0174400-00	Rice	nucleus	75.87	75.16
KXG40072	Sorghum	nucleus	66.67	66.46
Zm00001d048296_P001	Maize	nucleus	63.49	65.15
Zm00001d027870_P001	Maize	nucleus	66.35	65.11
CDY33815	Canola	nucleus	23.17	63.48
Zm00001d048297_P001	Maize	nucleus	61.9	60.56
VIT_08s0007g08150.t01	Wine grape	nucleus	41.59	45.64
KRH66977	Soybean	nucleus	39.37	43.66
KRG95297	Soybean	nucleus	38.41	42.91
AT3G57600.1	Thale cress	nucleus	36.83	41.88
Bra014617.1-P	Field mustard	nucleus	34.29	41.7
CDX88955	Canola	nucleus	34.29	41.54
Bra007341.1-P	Field mustard	nucleus	34.92	40.74
CDY06088	Canola	nucleus	34.92	40.74
CDX72012	Canola	nucleus	34.92	40.29
PGSC0003DMT400060970	Potato	nucleus	40.0	40.26
KRG93709	Soybean	nucleus	30.48	40.0
KRG93713	Soybean	nucleus	34.6	39.93
KRH16554	Soybean	nucleus	32.38	39.38
GSMUA_Achr3P29800_001	Banana	mitochondrion	23.49	39.36
KRH71963	Soybean	nucleus	38.41	39.16
CDY52095	Canola	nucleus	32.7	38.72
KRH33104	Soybean	nucleus	38.41	37.93
TraesCS2B01G529200.1	Wheat	plastid	19.68	32.12
GSMUA_Achr7P27150_001	Banana	nucleus	25.71	31.15
TraesCS1B01G256000.1	Wheat	nucleus	22.22	30.43
TraesCS1B01G236700.1	Wheat	nucleus	20.32	25.0
TraesCS1B01G235100.2	Wheat	nucleus	22.54	18.3
CDY33814	Canola	nucleus	4.44	16.09
TraesCS1B01G307000.1	Wheat	nucleus	19.05	15.58

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF3	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS4B01G290100	EnsemblPlants:TraesCS4B01G290100.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr4B:+:574948889..574949836

Molecular Weight (calculated)

32976.5 Da

IEP (calculated)

6.603

GRAVY (calculated)

-0.443

Length

315 amino acids

Sequence
(BLAST)

001: MESYVRKRSW KKGPTRGKGG PQNAACEYRG VRQRTWGKWV AEIREPNKRA RIWLGSFATA EEAALAYDEA ARRLYGPDAF LNLPHLRAAA GATAQQRMIR
101: WLPAAAAANG ARGPAAGAVP AYGLLNLNAQ HNVHVIHQRL QELKSSSSPA KPQQHSRRTP PPPPPPPAAS SPSSTVTTGA MPPSASCFQA QLEHAMAMTA
201: AAESAPPCDG FGAGRPQLDL KEFLQQIGVL GEDDGSAAGK HQGVDGDDGE VADAFGFGDG NGSGTGAEFD WDALAADMTD IAAGGHGGGG LGVNGAFHMD
301: DLDQFGSVPI PVWDI

Best Arabidopsis Sequence Match ( AT3G57600.1 )
(BLAST)

001: MEKSSSMKQW KKGPARGKGG PQNALCQYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA EEAAMAYDEA ALKLYGHDAY LNLPHLQRNT RPSLSNSQRF
101: KWVPSRKFIS MFPSCGMLNV NAQPSVHIIQ QRLEELKKTG LLSQSYSSSS SSTESKTNTS FLDEKTSKGE TDNMFEGGDQ KKPEIDLTEF LQQLGILKDE
201: NEAEPSEVAE CHSPPPWNEQ EETGSPFRTE NFSWDTLIEM PRSETTTMQF DSSNFGSYDF EDDVSFPSIW DYYGSLD

Arabidopsis Description

DREB2FDehydration-responsive element-binding protein 2F [Source:UniProtKB/Swiss-Prot;Acc:Q9SVX5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.