Factsheet for Os03t0174400-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 24133045

msms PMID: 24133045 doi

DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty

National Institute of Plant Genome Research, New Delhi, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043409_P001	Maize	nucleus	33.33	84.8
Solyc10g080310.1.1	Tomato	nucleus	18.24	79.45
KXG40072	Sorghum	nucleus	77.67	78.16
TraesCS4B01G290100.1	Wheat	nucleus	75.16	75.87
TraesCS4D01G289200.1	Wheat	nucleus	74.21	73.98
TraesCS4A01G013600.1	Wheat	nucleus	73.9	73.44
CDY33815	Canola	nucleus	23.27	64.35
VIT_08s0007g08150.t01	Wine grape	nucleus	44.34	49.13
KRH66977	Soybean	nucleus	39.94	44.72
KRG95297	Soybean	nucleus	39.62	44.68
Bra014617.1-P	Field mustard	nucleus	34.59	42.47
CDX88955	Canola	nucleus	34.59	42.31
AT3G57600.1	Thale cress	nucleus	36.79	42.24
KRG93713	Soybean	nucleus	36.16	42.12
KRH71963	Soybean	nucleus	40.88	42.07
Bra007341.1-P	Field mustard	nucleus	35.53	41.85
CDY06088	Canola	nucleus	35.53	41.85
CDX72012	Canola	nucleus	35.53	41.39
KRH16554	Soybean	nucleus	33.65	41.31
KRG93709	Soybean	nucleus	31.13	41.25
PGSC0003DMT400060970	Potato	nucleus	40.57	41.21
KRH33104	Soybean	nucleus	40.25	40.13
CDY52095	Canola	nucleus	33.33	39.85
GSMUA_Achr3P29800_001	Banana	mitochondrion	22.64	38.3
GSMUA_Achr7P27150_001	Banana	nucleus	26.1	31.92
Os08t0565200-01	Rice	nucleus	20.75	28.7
Os05t0351200-00	Rice	nucleus	22.33	26.39
Os01t0165000-02	Rice	nucleus	22.64	26.28
Os05t0473300-01	Rice	nucleus	16.98	20.69
CDY33814	Canola	nucleus	5.35	19.54

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	ProteinID:ABF94251.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:BAF11041.2
ProteinID:BAS82564.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	GO:GO:0044212	GO:GO:0045893	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlantsGene:Os03g0174400
EnsemblPlants:Os03t0174400-00	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF3
UniProt:Q10R18	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0000DB4C5A	SEG:seg	:

Description

ETHYLENE RESPONSE FACTOR 41Hypothetical conserved gene. (Os03t0174400-00)

Coordinates

chr3:+:3984892..3985856

Molecular Weight (calculated)

33458.2 Da

IEP (calculated)

6.309

GRAVY (calculated)

-0.384

Length

318 amino acids

Sequence
(BLAST)

001: MESYGRKRAW KKGPTRGKGG PQNAACEYRG VRQRTWGKWV AEIREPNKRT RLWLGSFATA EEAALAYDEA ARRLYGPDAF LNLPHLRAAS AAAAHQRLRW
101: LPASAAAAAA RGGAAAVPAY GLLNLNAQHN VHVIHQRLQE LKNSSSSPTK PPPRTPTRAN PPPPPLPTSS PCSTVTNSVG SAALPPPMSC FQALEQAMAA
201: TAAMESAPCD DDAAVVGFGA DKPQLDLKEF LQQIGVLKAD DDGATGKNGA VHGDDGELAD AFGFGGSGEF DWDALAADMS DIAGGHGGAL GANGGFQMDD
301: LHEVEQFGGC MPIPIWDI

Best Arabidopsis Sequence Match ( AT3G57600.1 )
(BLAST)

001: MEKSSSMKQW KKGPARGKGG PQNALCQYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA EEAAMAYDEA ALKLYGHDAY LNLPHLQRNT RPSLSNSQRF
101: KWVPSRKFIS MFPSCGMLNV NAQPSVHIIQ QRLEELKKTG LLSQSYSSSS SSTESKTNTS FLDEKTSKGE TDNMFEGGDQ KKPEIDLTEF LQQLGILKDE
201: NEAEPSEVAE CHSPPPWNEQ EETGSPFRTE NFSWDTLIEM PRSETTTMQF DSSNFGSYDF EDDVSFPSIW DYYGSLD

Arabidopsis Description

DREB2FDehydration-responsive element-binding protein 2F [Source:UniProtKB/Swiss-Prot;Acc:Q9SVX5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.