Factsheet for PGSC0003DMT400041065

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041064	Potato	nucleus	81.96	78.56
Solyc10g076370.1.1	Tomato	nucleus	69.86	75.56
PGSC0003DMT400041067	Potato	nucleus	18.04	66.95
PGSC0003DMT400073853	Potato	nucleus	12.56	34.16
Bra005113.1-P	Field mustard	nucleus	14.84	26.32
CDY71905	Canola	nucleus	14.61	26.23
PGSC0003DMT400061541	Potato	nucleus	18.95	25.94
CDY54455	Canola	nucleus	14.38	25.51
AT2G38340.1	Thale cress	nucleus	14.16	25.41
CDY61527	Canola	nucleus	14.38	21.43
PGSC0003DMT400069733	Potato	nucleus	19.63	21.03
KRH49463	Soybean	nucleus	16.44	20.45
PGSC0003DMT400009506	Potato	nucleus	12.1	20.23
PGSC0003DMT400060970	Potato	nucleus	12.79	17.89
EES18376	Sorghum	mitochondrion	9.36	17.23
PGSC0003DMT400085168	Potato	nucleus	10.5	15.86
Os05t0473300-01	Rice	nucleus	9.13	15.33
KRH00328	Soybean	nucleus	17.81	14.8
Zm00001d038446_P001	Maize	vacuole	9.36	14.7
PGSC0003DMT400092312	Potato	nucleus	9.82	13.69
TraesCS1B01G307000.1	Wheat	nucleus	10.96	12.47
HORVU1Hr1G070410.1	Barley	nucleus	10.96	12.4

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M1BAV3
EnsemblPlantsGene:PGSC0003DMG400015890	PGSC:PGSC0003DMG400015890	EnsemblPlants:PGSC0003DMT400041065	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF17
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000294CA00	SEG:seg	:	:

Description

DREB [Source:PGSC_GENE;Acc:PGSC0003DMG400015890]

Coordinates

chr10:+:49598328..49599724

Molecular Weight (calculated)

50000.1 Da

IEP (calculated)

4.106

GRAVY (calculated)

-0.867

Length

438 amino acids

Sequence
(BLAST)

001: MDFCVDRKLK RRRNGSDSID EILLRWRNFN KEVNSNNEQV KKKKKRKSPG NGSNKGCMPG KGGPENSGCK YRGVRQRTWG KWVAEIREPV YISAAKVMYG
101: SNAILNFPNC CDRSSNTRTS SLESSVQSSI DHEDLGVDDA KNIEIESDLK TSDTPDDDDD DGNGVVSTDL CYDYANHGSP ARCLTDEELE LIPEKNSLID
201: LECNSRYFPK SQKSCVKVEI PVIEEEIDKD EFVHNDVSNT IDVEPTVMCS KDDFSRPDEN CNSNDQIVLQ DMDYSMNILQ EQPLDFRSSE NLNEDVSTSL
301: EYMDHFLMND NCSMEATNIS DIFSLKENHD EGFDFQRFLE ESFDFKPMIV PQESSELNYA KNEEQFDCTY AYNQQIELQN SETNSEIRSD GIQKEQNLGA
401: FGLDDFGASN NWQPEDNIED LSIFSFDFDV SSYINDIN

Best Arabidopsis Sequence Match ( AT2G40340.3 )
(BLAST)

001: MPSEIVDRKR KSRGTRDVAE ILRQWREYNE QIEAESCIDG GGPKSIRKPP PKGSRKGCMK GKGGPENGIC DYRGVRQRRW GKWVAEIREP DGGARLWLGT
101: FSSSYEAALA YDEAAKAIYG QSARLNLPEI TNRSSSTAAT ATVSGSVTAF SDESEVCARE DTNASSGFGQ DSKRETLDAW LMGNGNEQEP LEFGVDETFD
201: INELLGILND NNVSGQETMQ YQVDRHPNFS YQTQFPNSNL LGSLNPMEIA QPGVDYGCPY VQPSDMENYG IDLDHRRFND LDIQDLDFGG DKDVHGST

Arabidopsis Description

DREB2CIntegrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G40340]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.