Factsheet for PGSC0003DMT400041064

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g076370.1.1	Tomato	nucleus	75.71	85.43
PGSC0003DMT400041067	Potato	nucleus	21.44	83.05
PGSC0003DMT400041065	Potato	nucleus	78.56	81.96
PGSC0003DMT400073853	Potato	nucleus	14.0	39.75
Bra005113.1-P	Field mustard	nucleus	18.16	33.6
AT2G38340.1	Thale cress	nucleus	17.72	33.2
CDY71905	Canola	nucleus	17.72	33.2
CDY54455	Canola	nucleus	17.72	32.79
PGSC0003DMT400061541	Potato	nucleus	20.57	29.38
CDY61527	Canola	nucleus	17.51	27.21
KRH49463	Soybean	nucleus	19.26	25.0
PGSC0003DMT400069733	Potato	nucleus	22.32	24.94
PGSC0003DMT400009506	Potato	nucleus	14.0	24.43
PGSC0003DMT400060970	Potato	nucleus	15.32	22.36
EES18376	Sorghum	mitochondrion	11.38	21.85
Os05t0473300-01	Rice	nucleus	11.6	20.31
PGSC0003DMT400085168	Potato	nucleus	12.69	20.0
Zm00001d038446_P001	Maize	vacuole	11.6	19.0
KRH00328	Soybean	nucleus	20.57	17.84
PGSC0003DMT400092312	Potato	nucleus	12.04	17.52
TraesCS1B01G307000.1	Wheat	nucleus	14.22	16.88
HORVU1Hr1G070410.1	Barley	nucleus	13.13	15.5

Protein Annotations

EntrezGene:107058148	MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M1BAV2	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400015889	PGSC:PGSC0003DMG400015889	EnsemblPlants:PGSC0003DMT400041064	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF17	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002967DA4
RefSeq:XP_015159004.1	SEG:seg	:	:	:	:

Description

AP2/ERF domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400015889]

Coordinates

chr10:+:49592307..49593838

Molecular Weight (calculated)

52293.0 Da

IEP (calculated)

4.193

GRAVY (calculated)

-0.825

Length

457 amino acids

Sequence
(BLAST)

001: MDFYVNRKLK RRRNGSDSID EILLRWRNFN PEVNSNNEQV KKKKRKSPGN GSNKGCMPGK GGPENSGCKY RGVRQRTWGK WVAEIREPVY ISGEFKSKGK
101: RLWLGTYSTA GDAAIAYDEA AKVMYGSNAI LNFPNCCDSP ITRTSSLESS GQSSVDHEDL VIDNAKNIEI ESDLKTSDTP EDDGGGVVNT DLSYDYANHG
201: SPACSWTEEE LEVITEENSV IELTNLEYDS RFFPKSQKSC VKVETPIMEE EIDKDEFVHN DVSNTIDMKP TVMFNKDDFS RPEEICNSND QIVLQDMDFR
301: SSENLNEDVS TRLEYMEHFL MEDNCSMEAT NISDIFSMTE NHDEAFDFQR FLEESFDFKP MVVPQESAEL NYAKNQEQFE CKYAYNQQID LQNSETNSEI
401: RLDRIISNQA DSKEQNLRAF GLDDFGASNS WQPEDNIEDF SMLNFDFDIS SYINDIS

Best Arabidopsis Sequence Match ( AT2G40340.1 )
(BLAST)

001: MPSEIVDRKR KSRGTRDVAE ILRQWREYNE QIEAESCIDG GGPKSIRKPP PKGSRKGCMK GKGGPENGIC DYRGVRQRRW GKWVAEIREP DGGARLWLGT
101: FSSSYEAALA YDEAAKAIYG QSARLNLPEI TNRSSSTAAT ATVSGSVTAF SDESEVCARE DTNASSGFGQ VKLEDCSDEY VLLDSSQCIK EELKGKEEVR
201: EEHNLAVGFG IGQDSKRETL DAWLMGNGNE QEPLEFGVDE TFDINELLGI LNDNNVSGQE TMQYQVDRHP NFSYQTQFPN SNLLGSLNPM EIAQPGVDYG
301: CPYVQPSDME NYGIDLDHRR FNDLDIQDLD FGGDKDVHGS T

Arabidopsis Description

DREB2CIntegrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G40340]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.