Factsheet for PGSC0003DMT400085168

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400092312	Potato	nucleus	91.38	84.39
VIT_13s0067g01400.t01	Wine grape	nucleus	48.62	46.08
PGSC0003DMT400041067	Potato	nucleus	17.24	42.37
KRH73281	Soybean	nucleus, plastid	44.48	38.17
GSMUA_Achr9P18060_001	Banana	nucleus	33.79	38.13
Zm00001d038001_P001	Maize	nucleus	31.03	36.29
KRH14926	Soybean	nucleus	40.34	36.22
GSMUA_Achr3P10100_001	Banana	nucleus	34.83	35.82
KXG21759	Sorghum	nucleus	31.72	35.8
GSMUA_Achr5P07400_001	Banana	nucleus	35.86	35.62
CDY52427	Canola	nucleus	39.31	35.29
Bra004978.1-P	Field mustard	nucleus	38.28	35.02
TraesCS1D01G225000.1	Wheat	plastid	30.34	34.24
PGSC0003DMT400073853	Potato	nucleus	18.97	34.16
TraesCS1B01G236700.1	Wheat	nucleus	30.0	33.98
TraesCS1A01G223400.1	Wheat	nucleus	30.34	33.85
AT2G40220.1	Thale cress	nucleus	38.28	33.84
Os05t0351200-00	Rice	nucleus	31.38	33.83
CDY54991	Canola	nucleus	38.97	33.53
Bra000178.1-P	Field mustard	nucleus	36.9	31.85
CDY07614	Canola	nucleus	36.9	31.85
HORVU1Hr1G060060.1	Barley	nucleus, plastid	30.34	28.66
PGSC0003DMT400009506	Potato	nucleus	19.31	21.37
PGSC0003DMT400060970	Potato	nucleus	21.38	19.81
PGSC0003DMT400061541	Potato	nucleus	19.66	17.81
PGSC0003DMT400069733	Potato	nucleus	21.38	15.16
PGSC0003DMT400041064	Potato	nucleus	20.0	12.69
PGSC0003DMT400041065	Potato	nucleus	15.86	10.5

Protein Annotations

EntrezGene:107062344	MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:ABI4	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009738	GO:GO:0009791	GO:GO:0009987
GO:GO:0048316	InterPro:IPR001471	InterPro:IPR036955	UniProt:M1D8W6	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400034739
PGSC:PGSC0003DMG400034739	EnsemblPlants:PGSC0003DMT400085168	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF7
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000295015E	RefSeq:XP_015168367.1	SEG:seg	:

Description

SGR [Source:PGSC_GENE;Acc:PGSC0003DMG400034739]

Coordinates

chr3:-:35389493..35390365

Molecular Weight (calculated)

32241.5 Da

IEP (calculated)

5.719

GRAVY (calculated)

-0.980

Length

290 amino acids

Sequence
(BLAST)

001: MNSTSAGSDN PHPTQDINHQ EKSTSEEKSN KKGSKGKGGP DNNKFRYRGV RQRSWGKWVA EIREPRKRTR RWLGTFATAE DAARAYDRAA IILYGSKAQL
101: NLQPSGANAS SSSSNSSKRG STSSTTQTLR PLLPRPPSGF DLSFSSSSST LLPPNVLAPA NNYLPYGFYP AVQYAEDISQ NPQYSIQKQT FDDNYGYLDG
201: ETTKASGMIW SDSNSNPNPN PNPREEDQNQ QYNQHNCLYD NVNTFVDAAP VVSDPVASPV LWPPIIDDND NYHPADIWDY GNNDPFLFDF

Best Arabidopsis Sequence Match ( AT2G40220.1 )
(BLAST)

001: MDPLASQHQH NHLEDNNQTL THNNPQSDST TDSSTSSAQR KRKGKGGPDN SKFRYRGVRQ RSWGKWVAEI REPRKRTRKW LGTFATAEDA ARAYDRAAVY
101: LYGSRAQLNL TPSSPSSVSS SSSSVSAASS PSTSSSSTQT LRPLLPRPAA ATVGGGANFG PYGIPFNNNI FLNGGTSMLC PSYGFFPQQQ QQQNQMVQMG
201: QFQHQQYQNL HSNTNNNKIS DIELTDVPVT NSTSFHHEVA LGQEQGGSGC NNNSSMEDLN SLAGSVGSSL SITHPPPLVD PVCSMGLDPG YMVGDGSSTI
301: WPFGGEEEYS HNWGSIWDFI DPILGEFY

Arabidopsis Description

ABI4Ethylene-responsive transcription factor ABI4 [Source:UniProtKB/Swiss-Prot;Acc:A0MES8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.