CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038001_P001	Maize	nucleus	87.55	90.73
TraesCS1D01G225000.1	Wheat	plastid	61.87	61.87
TraesCS1B01G236700.1	Wheat	nucleus	61.09	61.33
TraesCS1A01G223400.1	Wheat	nucleus	61.09	60.38
Os05t0351200-00	Rice	nucleus	61.48	58.74
HORVU1Hr1G060060.1	Barley	nucleus, plastid	60.31	50.49
GSMUA_Achr9P18060_001	Banana	nucleus	38.91	38.91
GSMUA_Achr3P10100_001	Banana	nucleus	41.63	37.94
GSMUA_Achr5P07400_001	Banana	nucleus	42.41	37.33
VIT_13s0067g01400.t01	Wine grape	nucleus	40.08	33.66
PGSC0003DMT400085168	Potato	nucleus	35.8	31.72
AT2G40220.1	Thale cress	nucleus	39.3	30.79
CDY52427	Canola	nucleus	38.13	30.34
KRH73281	Soybean	nucleus, plastid	39.3	29.88
Bra004978.1-P	Field mustard	nucleus	36.58	29.65
PGSC0003DMT400092312	Potato	nucleus	36.19	29.62
CDY54991	Canola	nucleus	37.74	28.78
Bra000178.1-P	Field mustard	nucleus	36.58	27.98
CDY07614	Canola	nucleus	36.58	27.98
KRH14926	Soybean	nucleus	35.02	27.86
EES18376	Sorghum	mitochondrion	24.51	26.47
EES02409	Sorghum	nucleus	21.01	20.61
KXG40072	Sorghum	nucleus	25.29	20.57
KXG21735	Sorghum	nucleus	24.9	19.05
EER92302	Sorghum	nucleus	25.29	18.52
OQU80673	Sorghum	nucleus	25.29	16.75

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	UniProt:A0A1B6P7N1	InterPro:ABI4	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009738	GO:GO:0009791	GO:GO:0009987
GO:GO:0048316	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KXG21759	ProteinID:KXG21759	ProteinID:KXG21759.1
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF7	SMART:SM00380
EnsemblPlantsGene:SORBI_3009G103800	SUPFAM:SSF54171	UniParc:UPI000266305B	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:-:41678513..41680561

Molecular Weight (calculated)

27801.2 Da

IEP (calculated)

7.829

GRAVY (calculated)

-0.722

Length

257 amino acids

Sequence
(BLAST)

001: MEPNNNQPAA TAEEAAAGSG PGGEGGRKGK APKGGPENGK FRYRGVRQRS WGKWVAEIRE PRKRSRKWLG TFATAEDAAR AYDRAALLLY GPRAHLNLTS
101: PPPPTLAAPR SHPHSSATSS SSAPPALRPL LPRPPLHHQL SSGACAPAPD FHHHHQQFQC HHLLPQAQPT PPLYYANTAT ASTVTTTVPT RVAVPQEPAV
201: APAVGSSTSL QEPQASTPEE APRETGWDYH GGEEEDYAAA LLWDEPEPFF WFDVFLK

Best Arabidopsis Sequence Match ( AT2G40220.1 )
(BLAST)

001: MDPLASQHQH NHLEDNNQTL THNNPQSDST TDSSTSSAQR KRKGKGGPDN SKFRYRGVRQ RSWGKWVAEI REPRKRTRKW LGTFATAEDA ARAYDRAAVY
101: LYGSRAQLNL TPSSPSSVSS SSSSVSAASS PSTSSSSTQT LRPLLPRPAA ATVGGGANFG PYGIPFNNNI FLNGGTSMLC PSYGFFPQQQ QQQNQMVQMG
201: QFQHQQYQNL HSNTNNNKIS DIELTDVPVT NSTSFHHEVA LGQEQGGSGC NNNSSMEDLN SLAGSVGSSL SITHPPPLVD PVCSMGLDPG YMVGDGSSTI
301: WPFGGEEEYS HNWGSIWDFI DPILGEFY

Arabidopsis Description

ABI4Ethylene-responsive transcription factor ABI4 [Source:UniProtKB/Swiss-Prot;Acc:A0MES8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.