Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004978.1-P | Field mustard | nucleus | 86.35 | 91.8 |
| CDY52427 | Canola | nucleus | 77.74 | 81.11 |
| CDY07614 | Canola | nucleus | 78.04 | 78.27 |
| AT2G40220.1 | Thale cress | nucleus | 71.22 | 73.17 |
| CDY33815 | Canola | nucleus | 16.62 | 48.7 |
| VIT_13s0067g01400.t01 | Wine grape | nucleus | 40.36 | 44.44 |
| GSMUA_Achr5P07400_001 | Banana | nucleus | 34.72 | 40.07 |
| KRH73281 | Soybean | nucleus, plastid | 39.17 | 39.05 |
| PGSC0003DMT400085168 | Potato | nucleus | 33.53 | 38.97 |
| GSMUA_Achr9P18060_001 | Banana | nucleus | 29.67 | 38.91 |
| KRH14926 | Soybean | nucleus | 37.09 | 38.7 |
| GSMUA_Achr3P10100_001 | Banana | nucleus | 32.34 | 38.65 |
| Zm00001d038001_P001 | Maize | nucleus | 27.89 | 37.9 |
| KXG21759 | Sorghum | nucleus | 28.78 | 37.74 |
| Os05t0351200-00 | Rice | nucleus | 29.38 | 36.8 |
| TraesCS1B01G236700.1 | Wheat | nucleus | 27.89 | 36.72 |
| PGSC0003DMT400092312 | Potato | nucleus | 34.12 | 36.62 |
| TraesCS1D01G225000.1 | Wheat | plastid | 27.89 | 36.58 |
| TraesCS1A01G223400.1 | Wheat | nucleus | 28.19 | 36.54 |
| HORVU1Hr1G060060.1 | Barley | nucleus, plastid | 27.89 | 30.62 |
| CDY39036 | Canola | nucleus | 17.8 | 30.3 |
| CDY70626 | Canola | nucleus | 18.1 | 29.9 |
| CDX68128 | Canola | nucleus | 17.8 | 29.41 |
| CDY20377 | Canola | nucleus | 17.21 | 29.29 |
| CDY47519 | Canola | nucleus | 17.51 | 28.64 |
| CDY64211 | Canola | nucleus, plastid | 17.21 | 28.16 |
| CDY71905 | Canola | nucleus | 18.4 | 25.41 |
| CDY54455 | Canola | nucleus | 18.4 | 25.1 |
| CDY06088 | Canola | nucleus | 19.29 | 24.07 |
| CDX72012 | Canola | nucleus | 19.29 | 23.81 |
| CDX88955 | Canola | nucleus | 18.1 | 23.46 |
| CDY52095 | Canola | nucleus | 18.4 | 23.31 |
| CDX93190 | Canola | nucleus | 14.24 | 22.54 |
| CDY58117 | Canola | nucleus | 18.99 | 22.15 |
| CDX70820 | Canola | nucleus | 18.4 | 22.14 |
| CDY02629 | Canola | nucleus | 18.4 | 21.53 |
| CDY67039 | Canola | nucleus | 18.4 | 21.23 |
| CDY36289 | Canola | nucleus | 18.1 | 20.96 |
| CDY61527 | Canola | nucleus | 18.1 | 20.75 |
| CDX92610 | Canola | nucleus | 18.4 | 20.26 |
| CDY00987 | Canola | nucleus | 17.8 | 19.29 |
| CDY25420 | Canola | nucleus | 18.69 | 19.21 |
| CDY04950 | Canola | nucleus | 18.1 | 18.83 |
| CDY52149 | Canola | nucleus | 18.1 | 18.6 |
| CDY08557 | Canola | nucleus | 17.21 | 18.47 |
| CDX70151 | Canola | nucleus | 17.8 | 18.18 |
| CDX98843 | Canola | nucleus | 17.8 | 17.96 |
| CDX73896 | Canola | nucleus | 20.18 | 17.8 |
| CDY52924 | Canola | nucleus | 15.73 | 15.77 |
| CDY00719 | Canola | nucleus | 3.56 | 5.06 |
| CDY33814 | Canola | nucleus | 0.3 | 1.15 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | GO:A0A078IXM5 | UniProt:A0A078IXM5 | InterPro:ABI4 | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDY54991 | ProteinID:CDY54991 | ProteinID:CDY54991.1 | InterPro:DNA-bd_dom_sf | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009738 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0048316 | EnsemblPlantsGene:GSBRNA2T00014957001 |
| InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31241 |
| PANTHER:PTHR31241:SF7 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0004EEB1E6 | SEG:seg | : |
Description
BnaCnng27900DBnaCnng27900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXM5]
Coordinates
chrLK033369:+:12112..13125
Molecular Weight (calculated)
36794.4 Da
IEP (calculated)
6.889
GRAVY (calculated)
-0.745
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPLPSQQEQ QHNLDDTIQQ TLDQNPQSDS TTTTTDSASP AQQRKRKGKG GPENSKFRYR GVRQRSWGKW VAEIREPRKR TRKWLGTFAT AEDAARAYDR
101: AAVFLYGSRA QLNLSPSSPS SVSSTSSSVS AASSSPSSSS STTQTLRPLL PRPSAPSLAS AFGPCGLPFT NNMLLSGGTS MLCPSYGLFP HQHQHQHQHQ
201: HQQNQNHMTQ VGQFHHQPYL NLHSSNNKMG DKMGDKMGDV ELTNVPLVNS ASFHHEVALG QEQGGSVCNN NNNSMENLNS VIGSVGSTVV DPVSSMGMDP
301: GYNIVGDGSS PVWPFSGEDE YSHWGNIWDF IDPLLDI
101: AAVFLYGSRA QLNLSPSSPS SVSSTSSSVS AASSSPSSSS STTQTLRPLL PRPSAPSLAS AFGPCGLPFT NNMLLSGGTS MLCPSYGLFP HQHQHQHQHQ
201: HQQNQNHMTQ VGQFHHQPYL NLHSSNNKMG DKMGDKMGDV ELTNVPLVNS ASFHHEVALG QEQGGSVCNN NNNSMENLNS VIGSVGSTVV DPVSSMGMDP
301: GYNIVGDGSS PVWPFSGEDE YSHWGNIWDF IDPLLDI
001: MDPLASQHQH NHLEDNNQTL THNNPQSDST TDSSTSSAQR KRKGKGGPDN SKFRYRGVRQ RSWGKWVAEI REPRKRTRKW LGTFATAEDA ARAYDRAAVY
101: LYGSRAQLNL TPSSPSSVSS SSSSVSAASS PSTSSSSTQT LRPLLPRPAA ATVGGGANFG PYGIPFNNNI FLNGGTSMLC PSYGFFPQQQ QQQNQMVQMG
201: QFQHQQYQNL HSNTNNNKIS DIELTDVPVT NSTSFHHEVA LGQEQGGSGC NNNSSMEDLN SLAGSVGSSL SITHPPPLVD PVCSMGLDPG YMVGDGSSTI
301: WPFGGEEEYS HNWGSIWDFI DPILGEFY
101: LYGSRAQLNL TPSSPSSVSS SSSSVSAASS PSTSSSSTQT LRPLLPRPAA ATVGGGANFG PYGIPFNNNI FLNGGTSMLC PSYGFFPQQQ QQQNQMVQMG
201: QFQHQQYQNL HSNTNNNKIS DIELTDVPVT NSTSFHHEVA LGQEQGGSGC NNNSSMEDLN SLAGSVGSSL SITHPPPLVD PVCSMGLDPG YMVGDGSSTI
301: WPFGGEEEYS HNWGSIWDFI DPILGEFY
Arabidopsis Description
ABI4Ethylene-responsive transcription factor ABI4 [Source:UniProtKB/Swiss-Prot;Acc:A0MES8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.