Factsheet for GSMUA_Achr5P07400_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P18060_001	Banana	nucleus	65.07	73.93
GSMUA_Achr3P10100_001	Banana	nucleus	69.18	71.63
Zm00001d038001_P001	Maize	nucleus	36.99	43.55
KXG21759	Sorghum	nucleus	37.33	42.41
TraesCS1D01G225000.1	Wheat	plastid	36.99	42.02
TraesCS1B01G236700.1	Wheat	nucleus	36.3	41.41
VIT_13s0067g01400.t01	Wine grape	nucleus	43.15	41.18
TraesCS1A01G223400.1	Wheat	nucleus	36.64	41.15
Os05t0351200-00	Rice	nucleus	37.67	40.89
CDY52427	Canola	nucleus	40.41	36.53
Bra004978.1-P	Field mustard	nucleus	39.38	36.28
PGSC0003DMT400085168	Potato	nucleus	35.62	35.86
HORVU1Hr1G060060.1	Barley	nucleus, plastid	36.99	35.18
AT2G40220.1	Thale cress	nucleus	39.38	35.06
CDY54991	Canola	nucleus	40.07	34.72
KRH73281	Soybean	nucleus, plastid	39.73	34.32
Bra000178.1-P	Field mustard	nucleus	39.38	34.23
CDY07614	Canola	nucleus	39.38	34.23
PGSC0003DMT400092312	Potato	nucleus	36.3	33.76
KRH14926	Soybean	nucleus	35.27	31.89
GSMUA_AchrUn_...	Banana	nucleus	20.55	29.7
GSMUA_Achr3P00320_001	Banana	nucleus	18.49	27.69
GSMUA_Achr9P04630_001	Banana	nucleus	21.92	21.55
GSMUA_Achr11P...	Banana	nucleus	20.21	21.15
GSMUA_AchrUn_...	Banana	nucleus	22.26	20.38
GSMUA_Achr5P28050_001	Banana	nucleus	18.49	20.3
GSMUA_Achr3P29800_001	Banana	mitochondrion	12.33	19.15
GSMUA_Achr6P32780_001	Banana	nucleus	20.55	14.6
GSMUA_Achr7P27150_001	Banana	nucleus	12.33	13.85

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:ABI4	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009738	GO:GO:0009791	GO:GO:0009987	GO:GO:0048316
EnsemblPlantsGene:GSMUA_Achr5G07400_001	EnsemblPlants:GSMUA_Achr5P07400_001	EnsemblPlants:GSMUA_Achr5T07400_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0SWG9
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF7	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI00029627AF	SEG:seg	:	:	:

Description

Putative Ethylene-responsive transcription factor ABI4 [Source:GMGC_GENE;Acc:GSMUA_Achr5G07400_001]

Coordinates

chr5:+:5317510..5318388

Molecular Weight (calculated)

30574.4 Da

IEP (calculated)

6.355

GRAVY (calculated)

-0.328

Length

292 amino acids

Sequence
(BLAST)

001: MDHQLHSPIE QHQLSFQSSS STTSDNSNSS TNTTSSAAAA ATVVGDAAAA AAGPSRRGKG KGGPENGKFR YRGVRQRSWG KWVAEIREPR KRTRKWLGTF
101: STAEDAAKAY DRAALILYGP RAQLNLQTSS SAAATGHHSN STTAASSATT TLRPLLPRPS VFPFPIPPPA GASTSYNYPP PFLYANMTDS TIMAPGPPME
201: PPSVEVGALG TAPGPVVASG PSSLGFSDPA MEEISSLAGS VSSSLSLSCP PVMTTESMGS APLVSSPLWP YDDYDVAASC LWDETDPFFF DI

Best Arabidopsis Sequence Match ( AT2G40220.1 )
(BLAST)

001: MDPLASQHQH NHLEDNNQTL THNNPQSDST TDSSTSSAQR KRKGKGGPDN SKFRYRGVRQ RSWGKWVAEI REPRKRTRKW LGTFATAEDA ARAYDRAAVY
101: LYGSRAQLNL TPSSPSSVSS SSSSVSAASS PSTSSSSTQT LRPLLPRPAA ATVGGGANFG PYGIPFNNNI FLNGGTSMLC PSYGFFPQQQ QQQNQMVQMG
201: QFQHQQYQNL HSNTNNNKIS DIELTDVPVT NSTSFHHEVA LGQEQGGSGC NNNSSMEDLN SLAGSVGSSL SITHPPPLVD PVCSMGLDPG YMVGDGSSTI
301: WPFGGEEEYS HNWGSIWDFI DPILGEFY

Arabidopsis Description

ABI4Ethylene-responsive transcription factor ABI4 [Source:UniProtKB/Swiss-Prot;Acc:A0MES8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.