Factsheet for TraesCS1A01G223400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G225000.1	Wheat	plastid	96.15	97.28
TraesCS1B01G236700.1	Wheat	nucleus	93.85	95.31
HORVU1Hr1G060060.1	Barley	nucleus, plastid	91.15	77.2
KXG21759	Sorghum	nucleus	60.38	61.09
Zm00001d038001_P001	Maize	nucleus	57.31	60.08
Os05t0351200-00	Rice	nucleus	58.08	56.13
GSMUA_Achr3P10100_001	Banana	nucleus	40.77	37.59
GSMUA_Achr9P18060_001	Banana	nucleus	36.92	37.35
GSMUA_Achr5P07400_001	Banana	nucleus	41.15	36.64
VIT_13s0067g01400.t01	Wine grape	nucleus	39.23	33.33
PGSC0003DMT400085168	Potato	nucleus	33.85	30.34
CDY52427	Canola	nucleus	37.69	30.34
AT2G40220.1	Thale cress	nucleus	37.69	29.88
KRH73281	Soybean	nucleus, plastid	38.46	29.59
Bra004978.1-P	Field mustard	nucleus	35.77	29.34
CDY07614	Canola	nucleus	36.54	28.27
Bra000178.1-P	Field mustard	nucleus	36.54	28.27
CDY54991	Canola	nucleus	36.54	28.19
KRH14926	Soybean	nucleus	34.62	27.86
PGSC0003DMT400092312	Potato	nucleus	33.46	27.71
TraesCS1A01G244800.1	Wheat	nucleus	23.08	25.86
TraesCS4A01G013600.1	Wheat	nucleus	24.62	20.0
TraesCS3A01G099200.1	Wheat	nucleus	20.77	19.42
TraesCS1A01G221900.1	Wheat	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	21.54	13.76

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:ABI4	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009738	GO:GO:0009791	GO:GO:0009987	GO:GO:0048316	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF7
SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS1A01G223400	EnsemblPlants:TraesCS1A01G223400.1	TIGR:cd00018	SEG:seg

Description

No Description!

Coordinates

chr1A:+:393612319..393613101

Molecular Weight (calculated)

27742.3 Da

IEP (calculated)

9.568

GRAVY (calculated)

-0.516

Length

260 amino acids

Sequence
(BLAST)

001: MEHKPNPAVL ATTTIEAASS SDVGSSVSSG GRKGKAAGKG GPENAKFRYR GVRQRSWGKW VAEIREPRKR SRKWLGTFAT AEDAARAYDR AALLLYGPRA
101: HLNLTAPPPL APGADSHPRP LGSSASSSSS SAPPPLRPLL PRPPQHSGGA GAVFHHHHHH HQYRFLPLRV TPPSTSPPLH YASTATASTV TTTVALAPPH
201: ETTASLPVAS SSTVAAQDRV PAEAAEAEVT PEWYLAAEEE DYEAALLWNE PDPLFDIFSK

Best Arabidopsis Sequence Match ( AT2G40220.1 )
(BLAST)

001: MDPLASQHQH NHLEDNNQTL THNNPQSDST TDSSTSSAQR KRKGKGGPDN SKFRYRGVRQ RSWGKWVAEI REPRKRTRKW LGTFATAEDA ARAYDRAAVY
101: LYGSRAQLNL TPSSPSSVSS SSSSVSAASS PSTSSSSTQT LRPLLPRPAA ATVGGGANFG PYGIPFNNNI FLNGGTSMLC PSYGFFPQQQ QQQNQMVQMG
201: QFQHQQYQNL HSNTNNNKIS DIELTDVPVT NSTSFHHEVA LGQEQGGSGC NNNSSMEDLN SLAGSVGSSL SITHPPPLVD PVCSMGLDPG YMVGDGSSTI
301: WPFGGEEEYS HNWGSIWDFI DPILGEFY

Arabidopsis Description

ABI4Ethylene-responsive transcription factor ABI4 [Source:UniProtKB/Swiss-Prot;Acc:A0MES8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.