Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G256000.1 | Wheat | nucleus | 98.71 | 99.57 |
| TraesCS1D01G244500.1 | Wheat | nucleus | 98.71 | 99.13 |
| HORVU1Hr1G063100.1 | Barley | nucleus | 93.53 | 87.5 |
| Os08t0565200-01 | Rice | nucleus | 59.05 | 59.57 |
| GSMUA_Achr3P00320_001 | Banana | nucleus | 43.53 | 51.79 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.83 | 51.49 |
| PGSC0003DMT400073853 | Potato | nucleus | 27.16 | 39.13 |
| Zm00001d031861_P001 | Maize | nucleus | 59.05 | 38.16 |
| Zm00001d049889_P001 | Maize | nucleus | 57.76 | 38.07 |
| Solyc04g050750.1.1 | Tomato | nucleus | 25.86 | 37.27 |
| CDY39036 | Canola | nucleus | 31.03 | 36.36 |
| Bra008200.1-P | Field mustard | nucleus | 31.03 | 36.36 |
| CDY20377 | Canola | nucleus | 30.17 | 35.35 |
| CDY70626 | Canola | nucleus | 31.03 | 35.29 |
| AT1G75490.1 | Thale cress | nucleus | 31.03 | 34.95 |
| Bra003752.1-P | Field mustard | nucleus | 30.6 | 34.8 |
| CDX68128 | Canola | nucleus | 30.6 | 34.8 |
| EER92302 | Sorghum | nucleus | 52.16 | 34.47 |
| CDY47519 | Canola | nucleus | 30.17 | 33.98 |
| Bra015840.1-P | Field mustard | nucleus, plastid | 30.17 | 33.98 |
| OQU80673 | Sorghum | nucleus | 56.47 | 33.76 |
| CDY64211 | Canola | nucleus, plastid | 29.31 | 33.01 |
| VIT_18s0001g13320.t01 | Wine grape | nucleus | 28.02 | 32.34 |
| KRH61095 | Soybean | nucleus | 34.05 | 32.24 |
| KRH51773 | Soybean | nucleus | 33.62 | 31.33 |
| KRH15125 | Soybean | nucleus | 33.19 | 27.21 |
| CDX70820 | Canola | nucleus | 32.76 | 27.14 |
| Solyc04g080910.1.1 | Tomato | nucleus | 28.45 | 26.61 |
| Bra006460.1-P | Field mustard | nucleus | 33.19 | 26.46 |
| Bra023674.1-P | Field mustard | nucleus | 32.76 | 26.39 |
| CDY58117 | Canola | nucleus | 32.76 | 26.3 |
| PGSC0003DMT400009506 | Potato | nucleus | 29.31 | 25.95 |
| TraesCS3A01G099200.1 | Wheat | nucleus | 31.03 | 25.9 |
| KRH05892 | Soybean | nucleus | 31.9 | 25.78 |
| CDY02629 | Canola | nucleus | 31.9 | 25.69 |
| CDX92610 | Canola | nucleus | 33.19 | 25.16 |
| Bra002159.1-P | Field mustard | nucleus | 33.19 | 25.16 |
| AT5G18450.1 | Thale cress | nucleus | 32.33 | 24.43 |
| CDY25420 | Canola | nucleus | 32.76 | 23.17 |
| TraesCS1A01G223400.1 | Wheat | nucleus | 25.86 | 23.08 |
| TraesCS4A01G013600.1 | Wheat | nucleus | 30.6 | 22.19 |
| TraesCS1A01G221900.1 | Wheat | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 35.34 | 20.15 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 |
| PFscan:PS51032 | PANTHER:PTHR31241 | PANTHER:PTHR31241:SF2 | SMART:SM00380 | SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS1A01G244800 |
| EnsemblPlants:TraesCS1A01G244800.1 | TIGR:cd00018 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1A:+:432852119..432852817
Molecular Weight (calculated)
24457.6 Da
IEP (calculated)
5.956
GRAVY (calculated)
-0.458
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQEVVAGMK QKKCCPLRRS RKGCMKGKGG PDNQQCPFRG VRQRTWGKWV AEIREPNRGA RLWLGTFATA LDAARAYDAA ARALYGDCAR LNLSASPSQM
101: QQHPPAQGSG GANGNSAPGT PCCSSNNSNS SASTPTGTPT DMDCSAWMQP SYCYSTAEAP EDFEAYVTRL PKAEDFGLEG FQEVPLEVLA EAGGGVSIWD
201: LSIAPDMAAA AASSAAASAC TVPQQPLQQP SC
101: QQHPPAQGSG GANGNSAPGT PCCSSNNSNS SASTPTGTPT DMDCSAWMQP SYCYSTAEAP EDFEAYVTRL PKAEDFGLEG FQEVPLEVLA EAGGGVSIWD
201: LSIAPDMAAA AASSAAASAC TVPQQPLQQP SC
001: MSSIEPKVMM VGANKKQRTV QASSRKGCMR GKGGPDNASC TYKGVRQRTW GKWVAEIREP NRGARLWLGT FDTSREAALA YDSAARKLYG PEAHLNLPES
101: LRSYPKTASS PASQTTPSSN TGGKSSSDSE SPCSSNEMSS CGRVTEEISW EHINVDLPVM DDSSIWEEAT MSLGFPWVHE GDNDISRFDT CISGGYSNWD
201: SFHSPL
101: LRSYPKTASS PASQTTPSSN TGGKSSSDSE SPCSSNEMSS CGRVTEEISW EHINVDLPVM DDSSIWEEAT MSLGFPWVHE GDNDISRFDT CISGGYSNWD
201: SFHSPL
Arabidopsis Description
DREB2DDehydration-responsive element-binding protein 2D [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.