Factsheet for Solyc04g080910.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009506	Potato	nucleus	88.71	83.97
Solyc10g080310.1.1	Tomato	nucleus	16.53	56.16
VIT_18s0001g13320.t01	Wine grape	nucleus	35.89	44.28
Bra008200.1-P	Field mustard	nucleus	34.27	42.93
CDY39036	Canola	nucleus	34.27	42.93
CDY20377	Canola	nucleus	33.87	42.42
Bra015840.1-P	Field mustard	nucleus, plastid	35.08	42.23
CDY47519	Canola	nucleus	35.08	42.23
CDY64211	Canola	nucleus, plastid	35.08	42.23
Bra003752.1-P	Field mustard	nucleus	34.27	41.67
CDX68128	Canola	nucleus	34.27	41.67
CDY70626	Canola	nucleus	34.27	41.67
AT1G75490.1	Thale cress	nucleus	34.27	41.26
KRH61095	Soybean	nucleus	39.92	40.41
KRH51773	Soybean	nucleus	40.32	40.16
Solyc04g050750.1.1	Tomato	nucleus	25.81	39.75
GSMUA_Achr3P00320_001	Banana	nucleus	27.82	35.38
GSMUA_AchrUn_...	Banana	nucleus	27.82	34.16
KRH15125	Soybean	nucleus	38.71	33.92
KRH05892	Soybean	nucleus	39.11	33.8
TraesCS2B01G529200.1	Wheat	plastid	26.21	33.68
HORVU2Hr1G111510.1	Barley	nucleus	25.81	33.16
Os08t0565200-01	Rice	nucleus	27.42	29.57
TraesCS1B01G256000.1	Wheat	nucleus	26.61	28.7
TraesCS1D01G244500.1	Wheat	nucleus	26.61	28.57
TraesCS1A01G244800.1	Wheat	nucleus	26.61	28.45
HORVU1Hr1G063100.1	Barley	nucleus	27.02	27.02
Zm00001d049889_P001	Maize	nucleus	29.44	20.74
Zm00001d031861_P001	Maize	nucleus	29.84	20.61
OQU80673	Sorghum	nucleus	30.65	19.59
EER92302	Sorghum	nucleus	27.42	19.37
Solyc06g050520.1.1	Tomato	nucleus	23.39	19.33
Solyc05g052410.1.1	Tomato	nucleus	25.81	16.04
Solyc10g076370.1.1	Tomato	nucleus	25.81	15.8
Solyc10g076380.1.1	Tomato	nucleus	20.56	15.79

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0044212
GO:GO:0045893	InterPro:IPR001471	InterPro:IPR036955	UniProt:K4BVH0	PFAM:PF00847	PIRSF:PIRSF038123
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF17	SMART:SM00380	SUPFAM:SSF54171
EnsemblPlantsGene:Solyc04g080910.1	EnsemblPlants:Solyc04g080910.1.1	UniParc:UPI0002765C89	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:+:64959624..64960370

Molecular Weight (calculated)

27022.0 Da

IEP (calculated)

4.548

GRAVY (calculated)

-0.544

Length

248 amino acids

Sequence
(BLAST)

001: MSSNSKKLIP ATSRKGCMRG KGGPENANCT YKGVRQRTWG KWVAEIREPN RGARLWLGTF DNSYDAAVVY DAAALKLYGA EAKLNLPHLY NNQAQAQAQI
101: QNSKPITIMS PSLSPVSTTT AQASSPSVTS VYNVASPSTW SVGSDDSSFY FNSHDFGIHN DIPSAFNLID INKTADDYSV DNATNNNQSS EVLGGEMFRD
201: LNMNLPEIDD SSIWEEAKAT TSFQEAVNDP GIGGYNLDDD LNFPPWCG

Best Arabidopsis Sequence Match ( AT1G75490.1 )
(BLAST)

001: MSSIEPKVMM VGANKKQRTV QASSRKGCMR GKGGPDNASC TYKGVRQRTW GKWVAEIREP NRGARLWLGT FDTSREAALA YDSAARKLYG PEAHLNLPES
101: LRSYPKTASS PASQTTPSSN TGGKSSSDSE SPCSSNEMSS CGRVTEEISW EHINVDLPVM DDSSIWEEAT MSLGFPWVHE GDNDISRFDT CISGGYSNWD
201: SFHSPL

Arabidopsis Description

DREB2DDehydration-responsive element-binding protein 2D [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.