Factsheet for VIT_18s0001g13320.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003752.1-P	Field mustard	nucleus	44.78	44.12
CDX68128	Canola	nucleus	44.78	44.12
Bra008200.1-P	Field mustard	nucleus	43.28	43.94
CDY39036	Canola	nucleus	43.28	43.94
CDY70626	Canola	nucleus	44.28	43.63
CDY20377	Canola	nucleus	42.79	43.43
AT1G75490.1	Thale cress	nucleus	43.28	42.23
KRH61095	Soybean	nucleus	51.24	42.04
KRH51773	Soybean	nucleus	51.24	41.37
Bra015840.1-P	Field mustard	nucleus, plastid	42.29	41.26
CDY47519	Canola	nucleus	42.29	41.26
CDY64211	Canola	nucleus, plastid	41.79	40.78
Solyc04g080910.1.1	Tomato	nucleus	44.28	35.89
PGSC0003DMT400009506	Potato	nucleus	45.77	35.11
GSMUA_Achr3P00320_001	Banana	nucleus	33.83	34.87
KRH15125	Soybean	nucleus	47.76	33.92
KRH05892	Soybean	nucleus	47.76	33.45
TraesCS2B01G529200.1	Wheat	plastid	31.84	33.16
GSMUA_AchrUn_...	Banana	nucleus	32.84	32.67
HORVU2Hr1G111510.1	Barley	nucleus	30.85	32.12
TraesCS1B01G256000.1	Wheat	nucleus	32.34	28.26
TraesCS1A01G244800.1	Wheat	nucleus	32.34	28.02
TraesCS1D01G244500.1	Wheat	nucleus	31.84	27.71
Os08t0565200-01	Rice	nucleus	31.34	27.39
HORVU1Hr1G063100.1	Barley	nucleus	32.34	26.21
VIT_08s0007g08150.t01	Wine grape	nucleus	33.33	23.34
Zm00001d031861_P001	Maize	nucleus	36.82	20.61
Zm00001d049889_P001	Maize	nucleus	35.32	20.17
VIT_13s0067g01960.t01	Wine grape	nucleus	33.83	19.15
EER92302	Sorghum	nucleus	33.33	19.09
OQU80673	Sorghum	nucleus	34.83	18.04
VIT_13s0067g01400.t01	Wine grape	nucleus	27.36	17.97

Protein Annotations

EntrezGene:100264271	wikigene:100264271	MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
ProteinID:CBI19777	ProteinID:CBI19777.3	InterPro:DNA-bd_dom_sf	UniProt:E0CPG1	EMBL:FN595227	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0044212	GO:GO:0045893
InterPro:IPR001471	InterPro:IPR036955	EntrezGene:LOC100264271	wikigene:LOC100264271	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF18	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0001BE1C00
ArrayExpress:VIT_18s0001g13320	EnsemblPlantsGene:VIT_18s0001g13320	EnsemblPlants:VIT_18s0001g13320.t01	RefSeq:XP_002280893	RefSeq:XP_002280893.2	SEG:seg

Description

No Description!

Coordinates

chr18:+:11347342..11348103

Molecular Weight (calculated)

22408.3 Da

IEP (calculated)

5.029

GRAVY (calculated)

-0.683

Length

201 amino acids

Sequence
(BLAST)

001: MRGKGGPENA MCTYKGVRQR TWGKWVAEIR EPNRGARLWL GTFDTSYEAA IAYDAAARKL YGPEAKLNLP ELCAQPPANT QFTHNQIPPN PNITPPSLTP
101: LPRPNIQTPP YHKYSVVPSP ATQEVPPHAK PTAINEKNGE NDDGMEGVWA NMNVTLPKVD DSLWTETLMS MDFPAFDDTE IFGSNLVDGN SWEMLQSPWR
201: T

Best Arabidopsis Sequence Match ( AT1G75490.1 )
(BLAST)

001: MSSIEPKVMM VGANKKQRTV QASSRKGCMR GKGGPDNASC TYKGVRQRTW GKWVAEIREP NRGARLWLGT FDTSREAALA YDSAARKLYG PEAHLNLPES
101: LRSYPKTASS PASQTTPSSN TGGKSSSDSE SPCSSNEMSS CGRVTEEISW EHINVDLPVM DDSSIWEEAT MSLGFPWVHE GDNDISRFDT CISGGYSNWD
201: SFHSPL

Arabidopsis Description

DREB2DDehydration-responsive element-binding protein 2D [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.