Factsheet for Bra015840.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 6
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47519	Canola	nucleus	98.54	98.54
CDY64211	Canola	nucleus, plastid	97.09	97.09
Bra008200.1-P	Field mustard	nucleus	81.07	84.34
AT1G75490.1	Thale cress	nucleus	83.98	83.98
Bra003752.1-P	Field mustard	nucleus	82.04	82.84
VIT_18s0001g13320.t01	Wine grape	nucleus	41.26	42.29
KRH61095	Soybean	nucleus	50.0	42.04
KRH51773	Soybean	nucleus	49.51	40.96
KRH05892	Soybean	nucleus	51.46	36.93
KRH15125	Soybean	nucleus	48.54	35.34
Solyc04g080910.1.1	Tomato	nucleus	42.23	35.08
HORVU2Hr1G111510.1	Barley	nucleus	32.04	34.2
GSMUA_AchrUn_...	Banana	nucleus	33.01	33.66
GSMUA_Achr3P00320_001	Banana	nucleus	31.55	33.33
PGSC0003DMT400009506	Potato	nucleus	41.75	32.82
TraesCS2B01G529200.1	Wheat	plastid	30.58	32.64
TraesCS1B01G256000.1	Wheat	nucleus	33.98	30.43
TraesCS1A01G244800.1	Wheat	nucleus	33.98	30.17
Os08t0565200-01	Rice	nucleus	33.5	30.0
TraesCS1D01G244500.1	Wheat	nucleus	33.5	29.87
HORVU1Hr1G063100.1	Barley	nucleus	33.98	28.23
Bra006460.1-P	Field mustard	nucleus	36.41	25.77
Bra023674.1-P	Field mustard	nucleus	35.44	25.35
Bra005113.1-P	Field mustard	nucleus	29.13	24.29
Bra002159.1-P	Field mustard	nucleus	35.44	23.86
Bra007341.1-P	Field mustard	nucleus	30.1	22.96
Bra034159.1-P	Field mustard	nucleus	31.07	22.07
Bra014617.1-P	Field mustard	nucleus	27.67	22.01
Bra028759.1-P	Field mustard	nucleus	32.04	21.64
Zm00001d049889_P001	Maize	nucleus	36.41	21.31
Zm00001d031861_P001	Maize	nucleus	35.44	20.33
Bra005852.1-P	Field mustard	nucleus	32.04	20.12
EER92302	Sorghum	nucleus	33.98	19.94
Bra009112.1-P	Field mustard	nucleus	31.55	19.7
Bra017011.1-P	Field mustard	nucleus	32.04	19.64
Bra029889.1-P	Field mustard	nucleus	29.61	19.43
OQU80673	Sorghum	nucleus	36.41	19.33
Bra004978.1-P	Field mustard	nucleus	27.67	17.98
Bra000178.1-P	Field mustard	nucleus	28.16	17.26
Bra001386.1-P	Field mustard	nucleus	30.58	16.41

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra015840	EnsemblPlants:Bra015840.1
EnsemblPlants:Bra015840.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4DH63	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31241	PANTHER:PTHR31241:SF18	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002541F7C	:

Description

AT1G75490 (E=6e-097) | DNA binding / transcription factor

Coordinates

chrA07:+:20577692..20578312

Molecular Weight (calculated)

23030.5 Da

IEP (calculated)

5.756

GRAVY (calculated)

-0.761

Length

206 amino acids

Sequence
(BLAST)

001: MSSIEPNVMM VGANKKQRTV QASSRKGCMR GKGGPDNASC TYKGVRQRTW GKWVAEIREP NRGARLWLGT FDTSREAALA YDSAARKLYG PEAHLNLPQE
101: SVRSYPETTQ TPSSNSGGKS DCWVNKESPC SSNEMSSWGT REEISWENMN ADLPVTDDSS IWEEATMSLG FPWVHEGDDN FSAFNTCISG GYSNWDSFNF
201: PIFRFH

Best Arabidopsis Sequence Match ( AT1G75490.1 )
(BLAST)

001: MSSIEPKVMM VGANKKQRTV QASSRKGCMR GKGGPDNASC TYKGVRQRTW GKWVAEIREP NRGARLWLGT FDTSREAALA YDSAARKLYG PEAHLNLPES
101: LRSYPKTASS PASQTTPSSN TGGKSSSDSE SPCSSNEMSS CGRVTEEISW EHINVDLPVM DDSSIWEEAT MSLGFPWVHE GDNDISRFDT CISGGYSNWD
201: SFHSPL

Arabidopsis Description

DREB2DDehydration-responsive element-binding protein 2D [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.