Factsheet for Bra000178.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07614	Canola	nucleus	100.0	100.0
Bra004978.1-P	Field mustard	nucleus	76.19	80.76
AT2G40220.1	Thale cress	nucleus	73.81	75.61
VIT_13s0067g01400.t01	Wine grape	nucleus	40.48	44.44
GSMUA_Achr5P07400_001	Banana	nucleus	34.23	39.38
GSMUA_Achr9P18060_001	Banana	nucleus	30.06	39.3
KRH14926	Soybean	nucleus	36.9	38.39
KRH73281	Soybean	nucleus, plastid	38.39	38.17
Zm00001d038001_P001	Maize	nucleus	27.98	37.9
GSMUA_Achr3P10100_001	Banana	nucleus	31.25	37.23
TraesCS1D01G225000.1	Wheat	plastid	28.27	36.97
PGSC0003DMT400085168	Potato	nucleus	31.85	36.9
TraesCS1B01G236700.1	Wheat	nucleus	27.98	36.72
KXG21759	Sorghum	nucleus	27.98	36.58
TraesCS1A01G223400.1	Wheat	nucleus	28.27	36.54
Os05t0351200-00	Rice	nucleus	28.87	36.06
PGSC0003DMT400092312	Potato	nucleus	31.85	34.08
HORVU1Hr1G060060.1	Barley	nucleus, plastid	27.98	30.62
Bra008200.1-P	Field mustard	nucleus	17.86	30.3
Bra015840.1-P	Field mustard	nucleus, plastid	17.26	28.16
Bra003752.1-P	Field mustard	nucleus	16.96	27.94
Bra014617.1-P	Field mustard	nucleus	18.75	24.32
Bra007341.1-P	Field mustard	nucleus	19.35	24.07
Bra005113.1-P	Field mustard	nucleus	16.96	23.08
Bra006460.1-P	Field mustard	nucleus	19.35	22.34
Bra023674.1-P	Field mustard	nucleus	18.45	21.53
Bra002159.1-P	Field mustard	nucleus	19.35	21.24
Bra034159.1-P	Field mustard	nucleus	16.96	19.66
Bra028759.1-P	Field mustard	nucleus	16.67	18.36
Bra029889.1-P	Field mustard	nucleus	16.96	18.15
Bra005852.1-P	Field mustard	nucleus	16.67	17.07
Bra001386.1-P	Field mustard	nucleus	19.35	16.93
Bra009112.1-P	Field mustard	nucleus	16.07	16.36
Bra017011.1-P	Field mustard	nucleus	14.58	14.58

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:ABI4	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra000178
EnsemblPlants:Bra000178.1	EnsemblPlants:Bra000178.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009738
GO:GO:0009791	GO:GO:0009987	GO:GO:0048316	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4C7K0
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF7	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI00025402C9	SEG:seg	:	:	:

Description

AT2G40220 (E=1e-082) ABI4, SUN6, SIS5, ISI3, GIN6, SAN5 | ABI4 (ABA INSENSITIVE 4); DNA binding / transcription factor

Coordinates

chrA03:-:9726891..9729607

Molecular Weight (calculated)

36646.8 Da

IEP (calculated)

5.776

GRAVY (calculated)

-0.828

Length

336 amino acids

Sequence
(BLAST)

001: MDPLPSQQQQ QQQHNLDDSI QQTLTHNPQT DSTDSTSSGQ QRKRKGKGGP DNSKFRYRGV RQRSWGKWVA EIREPRKRTR KWLGTFATAE DAARAYDRAA
101: VFLYGSRAQL NLSPSSPSSV SSSSSTVSAA SSSPSSSSSS TQTLRPLLPR PSASSSASAF GHYGVPFTNN IFLSGGTSML CPSYGLLPHQ QQQQQHNQMT
201: QVGQFHHQPY QNLHSFNNNN KMGDVELTDV PVANSTSFRH EVALGQEQGG SACNNTNYLM ENMNSLTGSV GSSLSISTAV VDPVSSMGMD PGYNMVGDGS
301: ATGWPFGGED EYSHWGMEEE AYEEVEEEET KDETAI

Best Arabidopsis Sequence Match ( AT2G40220.1 )
(BLAST)

001: MDPLASQHQH NHLEDNNQTL THNNPQSDST TDSSTSSAQR KRKGKGGPDN SKFRYRGVRQ RSWGKWVAEI REPRKRTRKW LGTFATAEDA ARAYDRAAVY
101: LYGSRAQLNL TPSSPSSVSS SSSSVSAASS PSTSSSSTQT LRPLLPRPAA ATVGGGANFG PYGIPFNNNI FLNGGTSMLC PSYGFFPQQQ QQQNQMVQMG
201: QFQHQQYQNL HSNTNNNKIS DIELTDVPVT NSTSFHHEVA LGQEQGGSGC NNNSSMEDLN SLAGSVGSSL SITHPPPLVD PVCSMGLDPG YMVGDGSSTI
301: WPFGGEEEYS HNWGSIWDFI DPILGEFY

Arabidopsis Description

ABI4Ethylene-responsive transcription factor ABI4 [Source:UniProtKB/Swiss-Prot;Acc:A0MES8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.