Factsheet for Zm00001d038001_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG21759	Sorghum	nucleus	90.73	87.55
TraesCS1D01G225000.1	Wheat	plastid	60.48	58.37
TraesCS1B01G236700.1	Wheat	nucleus	60.08	58.2
TraesCS1A01G223400.1	Wheat	nucleus	60.08	57.31
Os05t0351200-00	Rice	nucleus	60.48	55.76
HORVU1Hr1G060060.1	Barley	nucleus, plastid	59.27	47.88
Zm00001d043409_P001	Maize	nucleus	20.97	41.6
GSMUA_Achr9P18060_001	Banana	nucleus	39.11	37.74
GSMUA_Achr5P07400_001	Banana	nucleus	43.55	36.99
GSMUA_Achr3P10100_001	Banana	nucleus	40.73	35.82
VIT_13s0067g01400.t01	Wine grape	nucleus	40.73	33.01
PGSC0003DMT400085168	Potato	nucleus	36.29	31.03
AT2G40220.1	Thale cress	nucleus	39.92	30.18
KRH73281	Soybean	nucleus, plastid	41.13	30.18
CDY52427	Canola	nucleus	38.71	29.72
Bra004978.1-P	Field mustard	nucleus	37.1	29.02
PGSC0003DMT400092312	Potato	nucleus	36.69	28.98
KRH14926	Soybean	nucleus	36.69	28.17
Bra000178.1-P	Field mustard	nucleus	37.9	27.98
CDY07614	Canola	nucleus	37.9	27.98
CDY54991	Canola	nucleus	37.9	27.89
Zm00001d048296_P001	Maize	nucleus	25.4	20.52
Zm00001d027870_P001	Maize	nucleus	25.81	19.94
Zm00001d048297_P001	Maize	nucleus	25.81	19.88
Zm00001d038446_P001	Maize	vacuole	22.18	19.71
Zm00001d008665_P001	Maize	nucleus	20.56	19.54
Zm00001d010048_P004	Maize	nucleus	25.4	17.17
Zm00001d049889_P001	Maize	nucleus	24.19	17.05
Zm00001d031861_P001	Maize	nucleus	24.19	16.71

Protein Annotations

EntrezGene:100384333	Gene3D:3.30.730.10	MapMan:35.1	ProteinID:AAM95247.1	InterPro:ABI4	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:AQK85454.1	InterPro:DNA-bd_dom_sf	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009738
GO:GO:0009791	GO:GO:0009987	GO:GO:0048316	InterPro:IPR001471	InterPro:IPR036955	EMBL:KJ727551
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF7	UniProt:Q8L7W9
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00000A007E	EnsemblPlantsGene:Zm00001d038001	EnsemblPlants:Zm00001d038001_P001	EnsemblPlants:Zm00001d038001_T001
SEG:seg	:	:	:	:	:

Description

AP2-EREBP-transcription factor 164AP2 domain transcription factor%3B Putative AP2/EREBP transcription factor superfamily protein

Coordinates

chr6:-:144781755..144782501

Molecular Weight (calculated)

26799.1 Da

IEP (calculated)

8.771

GRAVY (calculated)

-0.687

Length

248 amino acids

Sequence
(BLAST)

001: MEASNNESAP TAEAAAGSGP AGGEGRKGKA PKGGPENGKF RYRGVRQRSW GKWVAEIREP RKRSRKWLGT FATAEDAARA YDRAALLLYG PRAHLNLTSP
101: PPPTLAAPRS HPHSSATSSA PPALRPLLPR PPLHQLSSDG APAPDFHYHN QFQRRLLPQP TPTLYYANTA TASTVTTSVP TRVAVPQEPA IAPAVGSSTS
201: LQEPQVGTPE EARGEAGWDY NGGEEEDYAA ALLWDEPEPF FWFDVFLK

Best Arabidopsis Sequence Match ( AT2G40220.1 )
(BLAST)

001: MDPLASQHQH NHLEDNNQTL THNNPQSDST TDSSTSSAQR KRKGKGGPDN SKFRYRGVRQ RSWGKWVAEI REPRKRTRKW LGTFATAEDA ARAYDRAAVY
101: LYGSRAQLNL TPSSPSSVSS SSSSVSAASS PSTSSSSTQT LRPLLPRPAA ATVGGGANFG PYGIPFNNNI FLNGGTSMLC PSYGFFPQQQ QQQNQMVQMG
201: QFQHQQYQNL HSNTNNNKIS DIELTDVPVT NSTSFHHEVA LGQEQGGSGC NNNSSMEDLN SLAGSVGSSL SITHPPPLVD PVCSMGLDPG YMVGDGSSTI
301: WPFGGEEEYS HNWGSIWDFI DPILGEFY

Arabidopsis Description

ABI4Ethylene-responsive transcription factor ABI4 [Source:UniProtKB/Swiss-Prot;Acc:A0MES8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.