Factsheet for Solyc05g052410.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069733	Potato	nucleus	89.97	87.78
Solyc10g080310.1.1	Tomato	nucleus	12.03	65.75
Solyc06g050520.1.1	Tomato	nucleus	42.11	56.0
KRH26854	Soybean	nucleus	25.31	51.27
KRH22495	Soybean	nucleus	25.31	51.01
AT2G40350.2	Thale cress	nucleus	20.8	50.61
KRH56072	Soybean	nucleus	24.81	46.26
KRH25441	Soybean	nucleus	24.31	45.97
VIT_13s0067g01960.t01	Wine grape	nucleus	39.35	44.23
CDX93190	Canola	nucleus	22.81	42.72
KRH73245	Soybean	nucleus	39.35	40.05
KRH14906	Soybean	nucleus	38.85	39.44
Solyc04g050750.1.1	Tomato	nucleus	15.29	37.89
CDY52924	Canola	nucleus	30.33	36.01
Bra017011.1-P	Field mustard	nucleus	30.33	36.01
GSMUA_Achr11P...	Banana	nucleus	23.81	34.05
AT2G40340.6	Thale cress	mitochondrion, nucleus, plastid	29.57	33.91
GSMUA_Achr9P04630_001	Banana	nucleus	24.31	32.66
GSMUA_Achr5P28050_001	Banana	nucleus	21.3	31.95
GSMUA_Achr6P32780_001	Banana	nucleus	27.07	26.28
Solyc04g080910.1.1	Tomato	nucleus	16.04	25.81
Solyc10g076380.1.1	Tomato	nucleus	20.3	25.08
Solyc10g076370.1.1	Tomato	nucleus	24.81	24.44

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ncoils:Coil	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0044212
GO:GO:0045893	InterPro:IPR001471	InterPro:IPR036955	UniProt:K4C1S2	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF2	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc05g052410.1
EnsemblPlants:Solyc05g052410.1.1	UniParc:UPI0002765D0D	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:+:62635545..62636744

Molecular Weight (calculated)

44714.5 Da

IEP (calculated)

4.364

GRAVY (calculated)

-0.866

Length

399 amino acids

Sequence
(BLAST)

001: MMLPMDYTRK KKSRSRKDAP KNVAETLAKW KEVNEKLDAC DDDGRKPVRK VPAKGSKKGC MKGKGGPDNG RCKYRGVRQR TWGKWVAEIR EPHRGRRLWL
101: GTFDTAIEAA LAYDEAARAM YGPCARLNLP DYYASSKESS KDDSSLPTVS RSDSNTASSF SEVCPAGDMM RGRANVPAAR HEDRSIEIDG ARTGSNEIGT
201: PLSSLREEAE DETKEVSDKS ETFTPLSSLR EQAEDEAKQV LDKSETFEIK DEPAACSYDS WDIGQEDLGN FCLDDEMFDV NELLGMMDST PVDASAPSQD
301: VGFVPPKQEQ YAYDPSYQLH SAAYDANQLS NPAYQLDNAD DQFSNPLYQL DNAGVDTLEG LQQMEQQSPI EVDYDFDFLR PGRQEDFHFC LDELDVLDF

Best Arabidopsis Sequence Match ( AT2G40340.1 )
(BLAST)

001: MPSEIVDRKR KSRGTRDVAE ILRQWREYNE QIEAESCIDG GGPKSIRKPP PKGSRKGCMK GKGGPENGIC DYRGVRQRRW GKWVAEIREP DGGARLWLGT
101: FSSSYEAALA YDEAAKAIYG QSARLNLPEI TNRSSSTAAT ATVSGSVTAF SDESEVCARE DTNASSGFGQ VKLEDCSDEY VLLDSSQCIK EELKGKEEVR
201: EEHNLAVGFG IGQDSKRETL DAWLMGNGNE QEPLEFGVDE TFDINELLGI LNDNNVSGQE TMQYQVDRHP NFSYQTQFPN SNLLGSLNPM EIAQPGVDYG
301: CPYVQPSDME NYGIDLDHRR FNDLDIQDLD FGGDKDVHGS T

Arabidopsis Description

DREB2CIntegrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G40340]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.