Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28044313
|
gfp PMID:
28044313
doi
Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China., School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China., State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources/Guangdong Provincial Key Laboratory of Postharvest Science of Fruits and Vegetables, College of Horticultural Science, South China Agricultural University, Guangzhou, 510642, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 39.85 | 37.99 |
| KRH26854 | Soybean | nucleus | 25.56 | 34.52 |
| KRH22495 | Soybean | nucleus | 25.56 | 34.34 |
| GSMUA_Achr9P04630_001 | Banana | nucleus | 37.97 | 34.01 |
| GSMUA_Achr3P00320_001 | Banana | nucleus | 24.81 | 33.85 |
| KRH56072 | Soybean | nucleus | 26.32 | 32.71 |
| GSMUA_AchrUn_... | Banana | nucleus | 24.44 | 32.18 |
| KRH25441 | Soybean | nucleus | 24.44 | 30.81 |
| VIT_13s0067g01960.t01 | Wine grape | nucleus | 32.33 | 24.23 |
| GSMUA_Achr6P32780_001 | Banana | nucleus | 37.22 | 24.09 |
| Solyc06g050520.1.1 | Tomato | nucleus | 27.07 | 24.0 |
| PGSC0003DMT400061541 | Potato | nucleus | 27.82 | 23.12 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.44 | 22.88 |
| GSMUA_Achr9P18060_001 | Banana | nucleus | 20.68 | 21.4 |
| Solyc05g052410.1.1 | Tomato | nucleus | 31.95 | 21.3 |
| GSMUA_Achr3P10100_001 | Banana | nucleus | 22.18 | 20.92 |
| GSMUA_Achr3P29800_001 | Banana | mitochondrion | 14.29 | 20.21 |
| PGSC0003DMT400069733 | Potato | nucleus | 30.45 | 19.8 |
| KRH73245 | Soybean | nucleus | 28.95 | 19.64 |
| KRH14906 | Soybean | nucleus | 28.95 | 19.59 |
| GSMUA_Achr5P07400_001 | Banana | nucleus | 20.3 | 18.49 |
| GSMUA_Achr7P27150_001 | Banana | nucleus | 16.54 | 16.92 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr5G28050_001 | EnsemblPlants:GSMUA_Achr5P28050_001 | EnsemblPlants:GSMUA_Achr5T28050_001 |
| InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M0T2C9 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31241 | PANTHER:PTHR31241:SF17 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0002969DAD | SEG:seg |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G28050_001]
Coordinates
chr5:-:28405610..28406603
Molecular Weight (calculated)
29623.0 Da
IEP (calculated)
4.332
GRAVY (calculated)
-0.672
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGKGGPENR SCRYRGVRQR TWGKWVAEIR EPNRGNRLWL GTFPTAVQAA LAYDDAARAM YGTSARINLP GVVRRDSSES TTTLHHSDAI GASVSSADQI
101: KFLITKLKDE AHSDRMNVSG SRESIIEFPT VELEDEGGRN EEPSFVADAC NVELYQSDAP EGEFSIEDML RIMGADTDNS DADHFGAVGR ETNWQCTDPV
201: DMSLDVRHTD APTVWDIEQN PFDYSDTLLR SLGEDWEYGP GETPNTVDFG ISCADLLSSP ERWYKS
101: KFLITKLKDE AHSDRMNVSG SRESIIEFPT VELEDEGGRN EEPSFVADAC NVELYQSDAP EGEFSIEDML RIMGADTDNS DADHFGAVGR ETNWQCTDPV
201: DMSLDVRHTD APTVWDIEQN PFDYSDTLLR SLGEDWEYGP GETPNTVDFG ISCADLLSSP ERWYKS
001: MKGKGGPENG ICDYRGVRQR RWGKWVAEIR EPDGGARLWL GTFSSSYEAA LAYDEAAKAI YGQSARLNLP EITNRSSSTA ATATVSGSVT AFSDESEVCA
101: REDTNASSGF GQVKLEDCSD EYVLLDSSQC IKEELKGKEE VREEHNLAVG FGIGQDSKRE TLDAWLMGNG NEQEPLEFGV DETFDINELL GILNDNNVSG
201: QETMQYQVDR HPNFSYQTQF PNSNLLGSLN PMEIAQPGVD YGCPYVQPSD MENYGIDLDH RRFNDLDIQD LDFGGDKDVH GST
101: REDTNASSGF GQVKLEDCSD EYVLLDSSQC IKEELKGKEE VREEHNLAVG FGIGQDSKRE TLDAWLMGNG NEQEPLEFGV DETFDINELL GILNDNNVSG
201: QETMQYQVDR HPNFSYQTQF PNSNLLGSLN PMEIAQPGVD YGCPYVQPSD MENYGIDLDH RRFNDLDIQD LDFGGDKDVH GST
Arabidopsis Description
DREB2CIntegrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G40340]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.