Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28044313
|
gfp PMID:
28044313
doi
Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China., School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China., State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources/Guangdong Provincial Key Laboratory of Postharvest Science of Fruits and Vegetables, College of Horticultural Science, South China Agricultural University, Guangzhou, 510642, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P32780_001 | Banana | nucleus | 57.91 | 41.85 |
| GSMUA_Achr11P... | Banana | nucleus | 38.72 | 41.22 |
| KRH26854 | Soybean | nucleus | 26.26 | 39.59 |
| KRH22495 | Soybean | nucleus | 26.26 | 39.39 |
| GSMUA_Achr5P28050_001 | Banana | nucleus | 34.01 | 37.97 |
| KRH56072 | Soybean | nucleus | 26.94 | 37.38 |
| KRH25441 | Soybean | nucleus | 26.26 | 36.97 |
| GSMUA_AchrUn_... | Banana | nucleus | 22.56 | 33.17 |
| GSMUA_Achr3P00320_001 | Banana | nucleus | 21.55 | 32.82 |
| Solyc06g050520.1.1 | Tomato | nucleus | 31.65 | 31.33 |
| PGSC0003DMT400061541 | Potato | nucleus | 31.31 | 29.06 |
| VIT_13s0067g01960.t01 | Wine grape | nucleus | 34.68 | 29.01 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.64 | 28.53 |
| KRH14906 | Soybean | nucleus | 32.66 | 24.68 |
| KRH73245 | Soybean | nucleus | 32.32 | 24.49 |
| Solyc05g052410.1.1 | Tomato | nucleus | 32.66 | 24.31 |
| GSMUA_Achr9P18060_001 | Banana | nucleus | 20.54 | 23.74 |
| PGSC0003DMT400069733 | Potato | nucleus | 32.66 | 23.72 |
| GSMUA_Achr3P10100_001 | Banana | nucleus | 20.88 | 21.99 |
| GSMUA_Achr5P07400_001 | Banana | nucleus | 21.55 | 21.92 |
| GSMUA_Achr3P29800_001 | Banana | mitochondrion | 13.13 | 20.74 |
| GSMUA_Achr7P27150_001 | Banana | nucleus | 15.15 | 17.31 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr9G04630_001 | EnsemblPlants:GSMUA_Achr9P04630_001 | EnsemblPlants:GSMUA_Achr9T04630_001 |
| InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M0TXH2 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31241 | PANTHER:PTHR31241:SF2 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000296A6E5 | SEG:seg |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G04630_001]
Coordinates
chr9:+:3045075..3045968
Molecular Weight (calculated)
32911.2 Da
IEP (calculated)
4.548
GRAVY (calculated)
-0.831
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGEERVRRA PAKGSRKGCM RGKGGPENPK CRYRGVRQRT WGKWVAEIRE PNRGSRLWLG TFPTAVEAAL AYDDAARAMY GTMARVNLPG AADVPAMRRE
101: SCETTTTSRK SSAVDGSISR EIDRKVPRFD PRDEVAYSDA TDVSDDWDKD VKLLPKVQQK DDAEKESTTT EACVELRQTG DRDPPTTDGR EEEFSVEEML
201: RMMGADAEAS MPCHLGPVGG DVNWQGISAA DDLALLDLQQ NPDATLWGMA QNPLGFDYGD DSLWRPLGDD WEYGPVEVPK RAELGTFDAD FSSGPRR
101: SCETTTTSRK SSAVDGSISR EIDRKVPRFD PRDEVAYSDA TDVSDDWDKD VKLLPKVQQK DDAEKESTTT EACVELRQTG DRDPPTTDGR EEEFSVEEML
201: RMMGADAEAS MPCHLGPVGG DVNWQGISAA DDLALLDLQQ NPDATLWGMA QNPLGFDYGD DSLWRPLGDD WEYGPVEVPK RAELGTFDAD FSSGPRR
001: MPSEIVDRKR KSRGTRDVAE ILRQWREYNE QIEAESCIDG GGPKSIRKPP PKGSRKGCMK GKGGPENGIC DYRGVRQRRW GKWVAEIREP DGGARLWLGT
101: FSSSYEAALA YDEAAKAIYG QSARLNLPEI TNRSSSTAAT ATVSGSVTAF SDESEVCARE DTNASSGFGQ DSKRETLDAW LMGNGNEQEP LEFGVDETFD
201: INELLGILND NNVSGQETMQ YQVDRHPNFS YQTQFPNSNL LGSLNPMEIA QPGVDYGCPY VQPSDMENYG IDLDHRRFND LDIQDLDFGG DKDVHGST
101: FSSSYEAALA YDEAAKAIYG QSARLNLPEI TNRSSSTAAT ATVSGSVTAF SDESEVCARE DTNASSGFGQ DSKRETLDAW LMGNGNEQEP LEFGVDETFD
201: INELLGILND NNVSGQETMQ YQVDRHPNFS YQTQFPNSNL LGSLNPMEIA QPGVDYGCPY VQPSDMENYG IDLDHRRFND LDIQDLDFGG DKDVHGST
Arabidopsis Description
DREB2CIntegrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G40340]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.