CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX87097
CDX88160
CDY05377
CDY05474
CDY10771
CDY10772
CDY19813
CDY22597
CDY24724
CDY41739
CDY43007
CDY60257
CDY67026

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11020.1	CDY22597	AT1G32230.1	19548978
AT3G11020.1	CDY41739	AT1G32230.1	19548978
AT3G11020.1	CDY43007	AT1G32230.1	19548978
AT3G11020.1	CDY60257	AT1G32230.1	19548978
AT3G11020.1	CDY67026	AT1G32230.1	19548978
AT3G11020.1	CDY10771	AT2G31070.1	21245844
AT3G11020.1	CDY10772	AT2G31070.1	21245844
AT3G11020.1	CDY24724	AT2G31070.1	21245844
AT3G11020.1	CDX87097	AT5G25160.1	21245844
AT3G11020.1	CDX88160	AT5G25160.1	21245844
AT3G11020.1	CDY05377	AT5G25160.1	21245844
AT3G11020.1	CDY05474	AT5G25160.1	21245844
AT3G11020.1	CDY19813	AT5G25160.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029889.1-P	Field mustard	nucleus	92.93	92.04
CDY08557	Canola	nucleus	91.96	91.08
CDY67039	Canola	nucleus	67.2	71.58
CDY36289	Canola	nucleus	65.92	70.45
AT3G11020.1	Thale cress	nucleus	63.99	60.3
CDX73896	Canola	nucleus	65.92	53.66
CDY04950	Canola	nucleus	52.73	50.62
CDX98843	Canola	nucleus	53.38	49.7
CDX70151	Canola	nucleus	52.41	49.39
CDY52149	Canola	nucleus	52.09	49.39
CDY33815	Canola	nucleus	16.72	45.22
CDY00719	Canola	nucleus	31.19	40.93
CDX93190	Canola	nucleus	22.83	33.33
CDY71905	Canola	nucleus	25.72	32.79
CDY54455	Canola	nucleus	25.4	31.98
HORVU6Hr1G050500.2	Barley	nucleus	29.9	31.0
CDY70626	Canola	nucleus	19.94	30.39
CDX68128	Canola	nucleus	19.94	30.39
CDY39036	Canola	nucleus	19.29	30.3
CDY52924	Canola	nucleus	32.48	30.06
HORVU6Hr1G050520.2	Barley	nucleus	22.83	29.96
CDY20377	Canola	nucleus	18.97	29.8
CDY47519	Canola	nucleus	19.61	29.61
CDY64211	Canola	nucleus, plastid	19.29	29.13
KXG21735	Sorghum	nucleus	30.87	28.57
CDY61527	Canola	nucleus	26.37	27.89
TraesCS1D01G223600.2	Wheat	nucleus	34.73	27.62
TraesCS1B01G235100.2	Wheat	nucleus	34.08	27.32
Zm00001d010048_P004	Maize	nucleus	31.83	26.98
TraesCS1A01G221900.1	Wheat	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	34.08	26.04
CDX70820	Canola	nucleus	23.15	25.71
CDX72012	Canola	nucleus	22.51	25.64
CDY06088	Canola	nucleus	22.19	25.56
CDY58117	Canola	nucleus	22.83	24.57
CDY02629	Canola	nucleus	22.51	24.31
HORVU1Hr1G060490.5	Barley	plasma membrane	35.05	24.11
CDX88955	Canola	nucleus	19.94	23.85
CDY52095	Canola	nucleus	20.26	23.68
CDX92610	Canola	nucleus	23.15	23.53
CDY25420	Canola	nucleus	22.83	21.65
CDY54991	Canola	nucleus	19.29	17.8
CDY52427	Canola	nucleus	18.33	17.65
CDY07614	Canola	nucleus	18.33	16.96
CDY33814	Canola	nucleus	3.22	11.49

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	GO:A0A078EIL3	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlants:CDY00987
ProteinID:CDY00987	ProteinID:CDY00987.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00111006001	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31241	PANTHER:PTHR31241:SF2	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0004EC04B9	SEG:seg	:	:	:	:

Description

BnaC05g42130D

Coordinates

chrLK031923:+:504012..504947

Molecular Weight (calculated)

35061.5 Da

IEP (calculated)

4.775

GRAVY (calculated)

-0.961

Length

311 amino acids

Sequence
(BLAST)

001: MAVYDQTGTH TITISRKRKS RARADGTTVA DRLKKWKEYN DSVNASSTKQ GEKPKRKAPA KGSKKGCMKG KGGPENSHSS FRGVRQRVWG KWVAEIREPN
101: KVSRLWLGTF PTAEEAASAY DEAAMAMYGP LARLNFPQQC LGSEFTSTSS QSEVCRDEDK AVLDVKQEDV DCKTRPVSEI KDVKEVCGGD EHGHAYTRLN
201: EFDEEYWSRL SNGLEKPKEE EEVIQPQQEL DMLTVADYGW PSDMQNEQGF WDPDDSFDLD ELLRDIDVGL LTGNDPCQNQ SQVHTGGYDS HPLQMEPQDN
301: HEFFNLSSLD P

Best Arabidopsis Sequence Match ( AT3G11020.1 )
(BLAST)

001: MAVYEQTGTE QPKKRKSRAR AGGLTVADRL KKWKEYNEIV EASAVKEGEK PKRKVPAKGS KKGCMKGKGG PDNSHCSFRG VRQRIWGKWV AEIREPKIGT
101: RLWLGTFPTA EKAASAYDEA ATAMYGSLAR LNFPQSVGSE FTSTSSQSEV CTVENKAVVC GDVCVKHEDT DCESNPFSQI LDVREESCGT RPDSCTVGHQ
201: DMNSSLNYDL LLEFEQQYWG QVLQEKEKPK QEEEEIQQQQ QEQQQQQLQP DLLTVADYGW PWSNDIVNDQ TSWDPNECFD INELLGDLNE PGPHQSQDQN
301: HVNSGSYDLH PLHLEPHDGH EFNGLSSLDI

Arabidopsis Description

DREB2BDehydration-responsive element-binding protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O82133]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.