Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009822.1-P | Field mustard | nucleus | 98.37 | 95.28 |
| CDY05474 | Canola | nucleus | 72.76 | 72.18 |
| CDY05377 | Canola | nucleus | 72.36 | 71.77 |
| AT5G25160.1 | Thale cress | nucleus | 66.26 | 69.36 |
| CDY19813 | Canola | nucleus | 71.14 | 68.9 |
| CDX87097 | Canola | plastid | 36.59 | 64.75 |
| CDX97070 | Canola | nucleus | 52.03 | 52.89 |
| CDX69795 | Canola | nucleus | 51.63 | 52.48 |
| VIT_09s0002g09080.t01 | Wine grape | nucleus | 42.28 | 38.95 |
| CDY66132 | Canola | nucleus | 35.77 | 38.6 |
| CDY39947 | Canola | nucleus | 33.33 | 37.27 |
| CDX79357 | Canola | nucleus | 34.15 | 37.17 |
| CDY71759 | Canola | nucleus | 34.15 | 37.0 |
| KRH23633 | Soybean | nucleus | 34.15 | 36.84 |
| Solyc06g068390.1.1 | Tomato | nucleus | 26.42 | 36.72 |
| CDX87338 | Canola | nucleus | 33.33 | 36.61 |
| KRH44531 | Soybean | nucleus | 33.33 | 36.44 |
| CDX67963 | Canola | nucleus | 33.33 | 36.28 |
| PGSC0003DMT400073330 | Potato | nucleus | 28.46 | 34.83 |
| KRH61695 | Soybean | nucleus | 39.43 | 34.52 |
| KRH09666 | Soybean | nucleus | 36.18 | 33.46 |
| CDY60000 | Canola | nucleus, plastid | 20.33 | 33.33 |
| KRH47378 | Soybean | nucleus | 34.96 | 32.95 |
| CDY58140 | Canola | nucleus, plastid | 19.92 | 32.67 |
| CDY11864 | Canola | nucleus, plastid | 19.92 | 32.67 |
| KRH52363 | Soybean | nucleus | 36.99 | 31.06 |
| GSMUA_Achr8P29430_001 | Banana | nucleus | 32.11 | 30.74 |
| KRH15782 | Soybean | nucleus | 38.62 | 30.45 |
| GSMUA_Achr2P05140_001 | Banana | nucleus | 30.89 | 30.04 |
| KRH05270 | Soybean | nucleus | 38.21 | 28.66 |
| TraesCS6D01G135200.1 | Wheat | nucleus | 18.7 | 26.59 |
| GSMUA_Achr5P22810_001 | Banana | nucleus | 27.64 | 26.46 |
| TraesCS6A01G145900.1 | Wheat | nucleus | 19.51 | 25.95 |
| CDY03873 | Canola | nucleus | 22.36 | 25.82 |
| GSMUA_Achr6P01990_001 | Banana | nucleus | 25.61 | 25.4 |
| HORVU0Hr1G015760.1 | Barley | nucleus | 17.89 | 25.14 |
| CDY24418 | Canola | nucleus | 21.54 | 25.12 |
| CDY69498 | Canola | nucleus | 21.54 | 25.12 |
| CDY72110 | Canola | nucleus | 21.54 | 24.88 |
| CDY07483 | Canola | nucleus | 24.8 | 24.8 |
| OQU84499 | Sorghum | nucleus | 19.51 | 24.62 |
| Os02t0182300-00 | Rice | cytosol, mitochondrion, peroxisome | 19.11 | 24.23 |
| CDY65468 | Canola | nucleus | 25.2 | 23.66 |
| CDY50321 | Canola | nucleus | 25.2 | 23.22 |
| TraesCS5D01G354900.1 | Wheat | nucleus | 19.92 | 22.07 |
| Zm00001d015525_P001 | Maize | nucleus | 15.04 | 21.14 |
| CDY39248 | Canola | cytosol | 12.6 | 19.14 |
| TraesCS5D01G355400.1 | Wheat | nucleus | 18.7 | 19.01 |
| EES00097 | Sorghum | nucleus | 22.76 | 18.92 |
| TraesCS3B01G560300.1 | Wheat | nucleus | 19.11 | 18.5 |
| TraesCS3D01G505300.1 | Wheat | nucleus | 18.7 | 17.83 |
| TraesCS3A01G497500.1 | Wheat | nucleus | 18.7 | 17.69 |
| Zm00001d050143_P001 | Maize | nucleus | 19.92 | 17.31 |
Protein Annotations
| EnsemblPlants:CDX88160 | EnsemblPlantsGene:GSBRNA2T00147612001 | Gene3D:3.30.160.60 | GO:A0A078DG46 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF258 |
| PFscan:PS50157 | ProteinID:CDX88160 | ProteinID:CDX88160.1 | ScanProsite:PS00028 | SUPFAM:SSF57667 | UniParc:UPI0004EEA5FD |
| MapMan:15.5.15 | : | : | : | : | : |
Description
BnaA06g27510D
Coordinates
chrLK031854:+:1027210..1027950
Molecular Weight (calculated)
27393.2 Da
IEP (calculated)
7.954
GRAVY (calculated)
-0.589
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MGISMDNKLP SDTSCVAFSS TAFPCKDSPN QIQEKSFKDE EADVNDSSQE LNLIDCINTS MDVHQGYYGS TTSAEQKLFS CNYCQRTFYS SQALGGHQNA
101: HKRERTLAKR GKRMAALASS FGHPYAFSPV PFHGHYNNRS LGIQAHSMSH KLISYNGFGS PYGQINWSRL PFDQLPAIGK LSSMENFHLQ QPLNVRSNYI
201: GIPSTNIGKI LVGSPITLEQ WKDDGGLLST NQEEQHKHKL DLSLKL
101: HKRERTLAKR GKRMAALASS FGHPYAFSPV PFHGHYNNRS LGIQAHSMSH KLISYNGFGS PYGQINWSRL PFDQLPAIGK LSSMENFHLQ QPLNVRSNYI
201: GIPSTNIGKI LVGSPITLEQ WKDDGGLLST NQEEQHKHKL DLSLKL
001: MDASIVSSST AFPYQDSLNQ SIEDEERDVH NSSHELNLID CIDDTTSIVN ESTTSTEQKL FSCNYCQRTF YSSQALGGHQ NAHKRERTLA KRGQRMAASA
101: SAFGHPYGFS PLPFHGQYNN HRSLGIQAHS ISHKLSSYNG FGGHYGQINW SRLPFDQQPA IGKFPSMDNF HHHHHQMMMM APSVNSRSNN IDSPSNTGRV
201: LEGSPTLEQW HGDKGLLLST SHHEEQQKLD LSLKL
101: SAFGHPYGFS PLPFHGQYNN HRSLGIQAHS ISHKLSSYNG FGGHYGQINW SRLPFDQQPA IGKFPSMDNF HHHHHQMMMM APSVNSRSNN IDSPSNTGRV
201: LEGSPTLEQW HGDKGLLLST SHHEEQQKLD LSLKL
Arabidopsis Description
ZFP3ZFP3 zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q0WT56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.