Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g068390.1.1 | Tomato | nucleus | 71.14 | 80.79 |
| PGSC0003DMT400048247 | Potato | nucleus, plastid | 27.86 | 36.13 |
| PGSC0003DMT400036628 | Potato | nucleus | 39.8 | 36.04 |
| Bra009000.1-P | Field mustard | nucleus | 39.3 | 32.64 |
| CDX97070 | Canola | nucleus | 39.3 | 32.64 |
| CDX69795 | Canola | nucleus | 39.3 | 32.64 |
| PGSC0003DMT400075890 | Potato | nucleus | 22.39 | 31.47 |
| CDY39947 | Canola | nucleus | 34.33 | 31.36 |
| Bra035157.1-P | Field mustard | nucleus | 33.33 | 31.31 |
| AT1G80730.1 | Thale cress | nucleus | 35.32 | 31.14 |
| Bra008445.1-P | Field mustard | nucleus | 33.33 | 30.88 |
| CDX87338 | Canola | nucleus | 34.33 | 30.8 |
| CDY66132 | Canola | nucleus | 34.83 | 30.7 |
| Bra003582.1-P | Field mustard | nucleus | 32.84 | 30.56 |
| CDY71759 | Canola | nucleus | 34.33 | 30.4 |
| Bra020486.1-P | Field mustard | nucleus | 37.31 | 30.24 |
| CDY05474 | Canola | nucleus | 37.31 | 30.24 |
| PGSC0003DMT400059824 | Potato | nucleus | 25.87 | 30.23 |
| AT5G25160.1 | Thale cress | nucleus | 35.32 | 30.21 |
| CDX67963 | Canola | nucleus | 33.83 | 30.09 |
| CDX79357 | Canola | nucleus | 33.83 | 30.09 |
| CDY05377 | Canola | nucleus | 36.32 | 29.44 |
| PGSC0003DMT400066536 | Potato | nucleus | 24.88 | 28.9 |
| CDX88160 | Canola | nucleus | 34.83 | 28.46 |
| PGSC0003DMT400075898 | Potato | nucleus | 32.84 | 28.09 |
| PGSC0003DMT400075895 | Potato | nucleus | 32.84 | 28.09 |
| PGSC0003DMT400060730 | Potato | nucleus | 32.84 | 27.97 |
| Bra009822.1-P | Field mustard | nucleus | 35.32 | 27.95 |
| AT5G10970.1 | Thale cress | nucleus | 37.81 | 27.94 |
| CDY19813 | Canola | nucleus | 34.33 | 27.17 |
| Bra036535.1-P | Field mustard | nucleus | 34.33 | 27.17 |
| PGSC0003DMT400058615 | Potato | nucleus | 32.84 | 26.4 |
| TraesCS6A01G145900.1 | Wheat | nucleus | 23.88 | 25.95 |
| HORVU0Hr1G015760.1 | Barley | nucleus | 22.39 | 25.71 |
| PGSC0003DMT400034689 | Potato | nucleus | 31.34 | 25.51 |
| TraesCS6D01G135200.1 | Wheat | nucleus | 21.89 | 25.43 |
| OQU84499 | Sorghum | nucleus | 22.89 | 23.59 |
| CDX87097 | Canola | plastid | 15.92 | 23.02 |
| Os02t0182300-00 | Rice | cytosol, mitochondrion, peroxisome | 21.39 | 22.16 |
| TraesCS5D01G354900.1 | Wheat | nucleus | 22.39 | 20.27 |
| TraesCS5D01G355400.1 | Wheat | nucleus | 23.88 | 19.83 |
| TraesCS3B01G560300.1 | Wheat | nucleus | 23.38 | 18.5 |
| TraesCS3D01G505300.1 | Wheat | nucleus | 23.38 | 18.22 |
| TraesCS3A01G497500.1 | Wheat | nucleus | 23.38 | 18.08 |
| Zm00001d015525_P001 | Maize | nucleus | 15.42 | 17.71 |
| Zm00001d050143_P001 | Maize | nucleus | 22.89 | 16.25 |
| EES00097 | Sorghum | nucleus | 22.89 | 15.54 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400073330 | EnsemblPlantsGene:PGSC0003DMG400028498 | EntrezGene:107062282 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF258 |
| PFscan:PS50157 | PGSC:PGSC0003DMG400028498 | RefSeq:XP_015168246.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 |
| UniParc:UPI000294DD47 | UniProt:M1CRU4 | MapMan:15.5.15 | : | : | : |
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028498]
Coordinates
chr6:-:49966413..49967299
Molecular Weight (calculated)
22801.7 Da
IEP (calculated)
7.667
GRAVY (calculated)
-0.774
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSQNQSAPR QQDDKQENDG LILDLSLLCN WELKPTDDQI IKTSDHTCHT ISSSEDDETE HQVFSCNYCY RNFYSSQALG GHQNAHKRER ITMAKRKQSI
101: ASVPILHRSL GIEAHSMIHK PNISSNTFTA PAISPLLYNT HSAGMRSRRR LDQFPGIDRP ESHRTSFGDG APRLNFGYMN KFPTVVSSQE DLKKLDLSLK
201: L
101: ASVPILHRSL GIEAHSMIHK PNISSNTFTA PAISPLLYNT HSAGMRSRRR LDQFPGIDRP ESHRTSFGDG APRLNFGYMN KFPTVVSSQE DLKKLDLSLK
201: L
001: MDSSSGKPRS SDSSCIISAS TSLQFSDSPK LSLENYNIDT VAAQEEDDHD QKEGVEGIKL DLMLAGYDSS QPQLNQELNL LDCLETGVVT PSFNGSTSTE
101: QKLFSCNYCQ RTFYSSQALG GHQNAHKRER TLAKRGQRMA SAAAFGHPYG FAPVPFHGQY SNRTLGIQAH SMSHKPSSYN VYGGEYGQIN WSRIPLVQQP
201: AIAKLTSTEN HYNHHQMMIA PPLTSTCENI GRFDVGRIPV EFPTSELWQR GEELLKPAEE EKQKNLDLSL KL
101: QKLFSCNYCQ RTFYSSQALG GHQNAHKRER TLAKRGQRMA SAAAFGHPYG FAPVPFHGQY SNRTLGIQAH SMSHKPSSYN VYGGEYGQIN WSRIPLVQQP
201: AIAKLTSTEN HYNHHQMMIA PPLTSTCENI GRFDVGRIPV EFPTSELWQR GEELLKPAEE EKQKNLDLSL KL
Arabidopsis Description
C2H2 and C2HC zinc fingers superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LEU3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.