Factsheet for PGSC0003DMT400048247

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
nucleus 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g006880.1.1	Tomato	nucleus, plastid	95.48	90.8
VIT_11s0052g01120.t01	Wine grape	nucleus	59.35	59.74
KRH19009	Soybean	nucleus	53.55	50.61
KRH02887	Soybean	nucleus	52.26	50.0
Bra006815.1-P	Field mustard	nucleus, plastid	45.16	46.67
AT5G57520.1	Thale cress	nucleus, plastid	45.16	46.67
CDY11864	Canola	nucleus, plastid	45.16	46.67
CDY60000	Canola	nucleus, plastid	43.87	45.33
Bra020437.1-P	Field mustard	nucleus, plastid	43.87	45.33
CDY58140	Canola	nucleus, plastid	43.23	44.67
HORVU5Hr1G088880.1	Barley	nucleus	30.97	32.43
TraesCS5D01G369800.1	Wheat	nucleus	32.26	31.65
TraesCS5B01G363400.1	Wheat	nucleus	30.97	31.58
TraesCS7A01G276700.1	Wheat	nucleus	30.32	31.54
TraesCS7D01G276700.1	Wheat	nucleus	30.97	31.37
TraesCS7B01G174400.1	Wheat	nucleus	30.97	31.37
HORVU0Hr1G031830.1	Barley	nucleus	29.68	31.08
TraesCS5B01G363600.1	Wheat	nucleus	29.68	30.87
Zm00001d031985_P001	Maize	nucleus	32.26	30.3
TraesCS5A01G361000.1	Wheat	nucleus	30.97	30.19
TraesCS5A01G360700.1	Wheat	nucleus	30.97	30.19
Os08t0555700-00	Rice	cytosol, nucleus, plastid	30.32	29.75
TraesCS5D01G369900.1	Wheat	nucleus	32.26	29.59
EER99346	Sorghum	nucleus	31.61	28.99
OQU80725	Sorghum	nucleus	30.97	28.92
PGSC0003DMT400075890	Potato	nucleus	26.45	28.67
TraesCS5B01G363300.1	Wheat	nucleus	31.61	28.66
Zm00001d021386_P001	Maize	nucleus	32.26	28.25
TraesCS5A01G360600.1	Wheat	nucleus	30.97	27.91
HORVU5Hr1G088950.1	Barley	nucleus	30.97	27.91
PGSC0003DMT400073330	Potato	nucleus	36.13	27.86
PGSC0003DMT400036628	Potato	nucleus	39.35	27.48
PGSC0003DMT400059824	Potato	nucleus	29.68	26.74
HORVU7Hr1G058220.1	Barley	plastid	32.26	25.38
HORVU5Hr1G088860.1	Barley	nucleus	32.9	25.37
PGSC0003DMT400066536	Potato	nucleus	27.74	24.86
PGSC0003DMT400075895	Potato	nucleus	36.77	24.26
PGSC0003DMT400075898	Potato	nucleus	36.77	24.26
TraesCS5B01G363200.1	Wheat	mitochondrion	30.97	23.08
PGSC0003DMT400034689	Potato	nucleus	35.48	22.27
PGSC0003DMT400060730	Potato	nucleus	33.55	22.03
PGSC0003DMT400058615	Potato	nucleus	34.84	21.6

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009838	GO:GO:0009908	GO:GO:0060862	InterPro:IPR013087	UniProt:M1BM51
EnsemblPlantsGene:PGSC0003DMG400018743	PGSC:PGSC0003DMG400018743	EnsemblPlants:PGSC0003DMT400048247	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374
PANTHER:PTHR26374:SF311	SUPFAM:SSF57667	UniParc:UPI0002960E96	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018743]

Coordinates

chr7:+:2630794..2631261

Molecular Weight (calculated)

17376.1 Da

IEP (calculated)

9.454

GRAVY (calculated)

-0.827

Length

155 amino acids

Sequence
(BLAST)

001: MSYEPNTALN LSLSRNDLLL DQSSSSSSSS PLSPVEPRVF SCNYCRRKFY SSQALGGHQN AHKLERTLAK KSRELSSTLR GTHSSWSNHN INNNYRSLSP
101: SGPSHTGHGH GARFVTNNDI ISYGRREMMM SYESMKNGHE SVQEDFGHLD LSLRL

Best Arabidopsis Sequence Match ( AT5G57520.1 )
(BLAST)

001: MDYQPNTSLR LSLPSYKNHQ LNLELVLEPS SMSSSSSSST NSSSCLEQPR VFSCNYCQRK FYSSQALGGH QNAHKLERTL AKKSRELFRS SNTVDSDQPY
101: PFSGRFELYG RGYQGFLESG GSRDFSARRV PESGLDQDQE KSHLDLSLRL

Arabidopsis Description

ZFP2Zinc finger protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39261]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.