Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G363600.1 | Wheat | nucleus | 57.56 | 66.44 |
| HORVU5Hr1G088880.1 | Barley | nucleus | 51.74 | 60.14 |
| TraesCS5A01G361000.1 | Wheat | nucleus | 55.23 | 59.75 |
| HORVU0Hr1G031830.1 | Barley | nucleus | 45.35 | 52.7 |
| HORVU5Hr1G088860.1 | Barley | nucleus | 59.3 | 50.75 |
| EER99346 | Sorghum | nucleus | 38.95 | 39.65 |
| Zm00001d021386_P001 | Maize | nucleus | 38.95 | 37.85 |
| Bra006815.1-P | Field mustard | nucleus, plastid | 27.91 | 32.0 |
| CDY11864 | Canola | nucleus, plastid | 27.91 | 32.0 |
| PGSC0003DMT400048247 | Potato | nucleus, plastid | 27.91 | 30.97 |
| AT5G57520.1 | Thale cress | nucleus, plastid | 26.74 | 30.67 |
| Bra020437.1-P | Field mustard | nucleus, plastid | 26.74 | 30.67 |
| CDY58140 | Canola | nucleus, plastid | 26.74 | 30.67 |
| CDY60000 | Canola | nucleus, plastid | 26.74 | 30.67 |
| HORVU7Hr1G058220.1 | Barley | plastid | 34.3 | 29.95 |
| Solyc07g006880.1.1 | Tomato | nucleus, plastid | 27.91 | 29.45 |
| VIT_11s0052g01120.t01 | Wine grape | nucleus | 26.16 | 29.22 |
| KRH19009 | Soybean | nucleus | 26.74 | 28.05 |
| KRH02887 | Soybean | nucleus | 26.16 | 27.78 |
| HORVU2Hr1G034650.1 | Barley | nucleus | 24.42 | 23.46 |
| HORVU4Hr1G013330.1 | Barley | nucleus | 27.91 | 21.62 |
| HORVU5Hr1G018830.1 | Barley | nucleus | 23.26 | 20.94 |
| HORVU4Hr1G064150.1 | Barley | plastid | 28.49 | 20.68 |
| HORVU0Hr1G015760.1 | Barley | nucleus | 20.93 | 20.57 |
| HORVU0Hr1G008920.1 | Barley | mitochondrion | 5.81 | 13.16 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G088950.1 | EnsemblPlantsGene:HORVU5Hr1G088950 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF311 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI000B4886CE | UniProt:A0A287S704 | MapMan:15.5.15 |
Description
No Description!
Coordinates
chrchr5H:+:583004582..583005100
Molecular Weight (calculated)
18376.6 Da
IEP (calculated)
8.358
GRAVY (calculated)
-0.320
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: LRPSTMEGEA PHHQLLLLHG LCLDLCLDTA THQRDVRRQA SPSAAAAAVE SERRHSYARE AFSCNYCQRK FFTSQALGGH QNAHKLERTL AKHSRDAYAA
101: NNAAAAATTP PSPFVARSWL HGGGDLWAYA ASPSPATSMV MGFGLGGWAG IRSSTTTAGG EGTVEMDLSL RL
101: NNAAAAATTP PSPFVARSWL HGGGDLWAYA ASPSPATSMV MGFGLGGWAG IRSSTTTAGG EGTVEMDLSL RL
001: MDYQPNTSLR LSLPSYKNHQ LNLELVLEPS SMSSSSSSST NSSSCLEQPR VFSCNYCQRK FYSSQALGGH QNAHKLERTL AKKSRELFRS SNTVDSDQPY
101: PFSGRFELYG RGYQGFLESG GSRDFSARRV PESGLDQDQE KSHLDLSLRL
101: PFSGRFELYG RGYQGFLESG GSRDFSARRV PESGLDQDQE KSHLDLSLRL
Arabidopsis Description
ZFP2Zinc finger protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39261]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.