Factsheet for PGSC0003DMT400075895

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075898	Potato	nucleus	96.17	96.17
PGSC0003DMT400075890	Potato	nucleus	55.74	91.61
PGSC0003DMT400058615	Potato	nucleus	74.04	69.6
KRG89273	Soybean	nucleus	52.77	52.1
KRH04587	Soybean	cytosol	43.4	51.52
KRH58613	Soybean	nucleus	54.04	51.0
KRH42519	Soybean	nucleus	52.77	49.4
PGSC0003DMT400034689	Potato	nucleus	48.09	45.75
KRH49708	Soybean	nucleus	48.94	45.28
PGSC0003DMT400060730	Potato	nucleus	45.11	44.92
GSMUA_Achr6P11350_001	Banana	nucleus	39.57	41.89
CDY07483	Canola	nucleus	43.83	41.87
AT1G66140.1	Thale cress	nucleus	45.96	41.54
Bra004148.1-P	Field mustard	nucleus	44.26	40.94
Bra039750.1-P	Field mustard	nucleus	45.53	40.84
CDY65468	Canola	nucleus	45.11	40.46
CDY50321	Canola	nucleus	45.53	40.07
PGSC0003DMT400066536	Potato	nucleus	28.09	38.15
CDY39248	Canola	cytosol	25.96	37.65
PGSC0003DMT400048247	Potato	nucleus, plastid	24.26	36.77
PGSC0003DMT400059824	Potato	nucleus	26.38	36.05
Zm00001d047968_P001	Maize	nucleus	31.49	34.91
Os03t0239300-01	Rice	nucleus	34.04	33.33
Zm00001d028371_P001	Maize	nucleus	30.64	32.88
PGSC0003DMT400073330	Potato	nucleus	28.09	32.84
TraesCS4D01G230300.1	Wheat	nucleus	29.79	32.11
HORVU4Hr1G064150.1	Barley	plastid	31.91	31.65
EER92577	Sorghum	cytosol, mitochondrion, nucleus	30.21	31.0
TraesCS4A01G073200.1	Wheat	nucleus	31.91	30.99
TraesCS4B01G229200.1	Wheat	nucleus	31.49	30.45
PGSC0003DMT400036628	Potato	nucleus	26.81	28.38
HORVU0Hr1G008920.1	Barley	mitochondrion	7.23	22.37

Protein Annotations

EnsemblPlants:PGSC0003DMT400075895	EnsemblPlantsGene:PGSC0003DMG400029510	EntrezGene:102602522	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF313
PFscan:PS50157	PGSC:PGSC0003DMG400029510	RefSeq:XP_006355047.1	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667
UniParc:UPI000294D4B6	UniProt:M1CVW5	MapMan:15.5.15	:	:	:

Description

ZFP4 (ZINC FINGER PROTEIN 4) [Source:PGSC_GENE;Acc:PGSC0003DMG400029510]

Coordinates

chr4:+:2869149..2870021

Molecular Weight (calculated)

25801.3 Da

IEP (calculated)

6.230

GRAVY (calculated)

-0.422

Length

235 amino acids

Sequence
(BLAST)

001: MKPPNFNLES EDESEVNNCQ VGSNISVQEI HPGPSLNLQQ ESVPVTLDLI LGFNSCDSEL KANGEASDEV VPHPPTAALS RVFSCNFCRR KFYSSQALGG
101: HQNAHKRERT LAKRAMRMGM LSDRYASLAS LPLHGTAFRS LGVEAHASAH QRISHQETPI HAVRSGARFE QGYFGMPVFV EDDEVEVFWP GSFRQIEGIG
201: GNMGYNSGQS SSINFVAVAP QTRTDQTLPD LNLKL

Best Arabidopsis Sequence Match ( AT1G66140.1 )
(BLAST)

001: MRPILDLEIE ASSGSSSSQV ASNLSPVGED YKPISLNLSL SFNNNNNNNL DLESSSLTLP LSSTSESSNP EQQQQQQPSV SKRVFSCNYC QRKFYSSQAL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL

Arabidopsis Description

ZFP4Zinc finger protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q39263]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.