Factsheet for PGSC0003DMT400075890

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075898	Potato	nucleus	93.01	56.6
PGSC0003DMT400075895	Potato	nucleus	91.61	55.74
PGSC0003DMT400058615	Potato	nucleus	76.92	44.0
KRH58613	Soybean	nucleus	58.74	33.73
KRH04587	Soybean	cytosol	46.15	33.33
KRH42519	Soybean	nucleus	58.04	33.07
KRG89273	Soybean	nucleus	53.85	32.35
PGSC0003DMT400034689	Potato	nucleus	53.85	31.17
KRH49708	Soybean	nucleus	54.55	30.71
GSMUA_Achr6P11350_001	Banana	nucleus	46.15	29.73
PGSC0003DMT400060730	Potato	nucleus	48.25	29.24
CDY07483	Canola	nucleus	46.15	26.83
PGSC0003DMT400048247	Potato	nucleus, plastid	28.67	26.45
Bra004148.1-P	Field mustard	nucleus	46.85	26.38
AT1G66140.1	Thale cress	nucleus	46.85	25.77
CDY65468	Canola	nucleus	46.15	25.19
Bra039750.1-P	Field mustard	nucleus	46.15	25.19
PGSC0003DMT400066536	Potato	nucleus	30.07	24.86
CDY50321	Canola	nucleus	46.15	24.72
PGSC0003DMT400059824	Potato	nucleus	27.97	23.26
Zm00001d047968_P001	Maize	nucleus	34.27	23.11
Zm00001d028371_P001	Maize	nucleus	34.97	22.83
EER92577	Sorghum	cytosol, mitochondrion, nucleus	36.36	22.71
TraesCS4D01G230300.1	Wheat	nucleus	34.27	22.48
PGSC0003DMT400073330	Potato	nucleus	31.47	22.39
PGSC0003DMT400036628	Potato	nucleus	34.27	22.07
Os03t0239300-01	Rice	nucleus	36.36	21.67
HORVU4Hr1G064150.1	Barley	plastid	34.27	20.68
TraesCS4A01G073200.1	Wheat	nucleus	34.97	20.66
TraesCS4B01G229200.1	Wheat	nucleus	34.27	20.16
CDY39248	Canola	cytosol	17.48	15.43
HORVU0Hr1G008920.1	Barley	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400075890	EnsemblPlantsGene:PGSC0003DMG401029508	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF313	PFscan:PS50157
PGSC:PGSC0003DMG401029508	ScanProsite:PS00028	SUPFAM:SSF57667	UniParc:UPI00029487CE	UniProt:M1CVW3	MapMan:15.5.15

Description

ZFP4 (ZINC FINGER PROTEIN 4) [Source:PGSC_GENE;Acc:PGSC0003DMG401029508]

Coordinates

chr4:+:2921195..2921626

Molecular Weight (calculated)

15712.6 Da

IEP (calculated)

8.089

GRAVY (calculated)

-0.443

Length

143 amino acids

Sequence
(BLAST)

001: MKPSNFNLES EDESKVSNCQ VGSNISVQEI RPGPSLNLQQ ESVPITLDLT LGFNSSDSEL KTNGEASDEV VPHPPTAALS RVFSCNFCRR MFYSSQALGR
101: HQNAHKRERT LANRAMRMGM LSDRYASLAS LPLHGAAFRS LGV

Best Arabidopsis Sequence Match ( AT1G66140.1 )
(BLAST)

001: MRPILDLEIE ASSGSSSSQV ASNLSPVGED YKPISLNLSL SFNNNNNNNL DLESSSLTLP LSSTSESSNP EQQQQQQPSV SKRVFSCNYC QRKFYSSQAL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL

Arabidopsis Description

ZFP4Zinc finger protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q39263]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.