Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d010048_P004 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G66140.1 | Zm00001d010048_P004 | AT3G11020.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92577 | Sorghum | cytosol, mitochondrion, nucleus | 91.78 | 87.77 |
| Zm00001d047968_P001 | Maize | nucleus | 79.0 | 81.6 |
| TraesCS4D01G230300.1 | Wheat | nucleus | 62.56 | 62.84 |
| Os03t0239300-01 | Rice | nucleus | 67.58 | 61.67 |
| HORVU4Hr1G064150.1 | Barley | plastid | 64.38 | 59.49 |
| TraesCS4B01G229200.1 | Wheat | nucleus | 65.75 | 59.26 |
| TraesCS4A01G073200.1 | Wheat | nucleus | 65.3 | 59.09 |
| HORVU0Hr1G008920.1 | Barley | mitochondrion | 15.98 | 46.05 |
| Zm00001d025350_P001 | Maize | nucleus | 21.92 | 41.03 |
| Zm00001d002745_P001 | Maize | nucleus | 21.46 | 40.17 |
| Zm00001d039773_P001 | Maize | nucleus | 21.46 | 40.17 |
| Zm00001d052006_P001 | Maize | nucleus | 21.46 | 40.17 |
| Zm00001d035257_P001 | Maize | nucleus | 21.0 | 39.32 |
| Zm00001d035262_P001 | Maize | nucleus | 21.0 | 39.32 |
| Zm00001d016069_P001 | Maize | nucleus | 21.0 | 39.32 |
| Zm00001d006367_P001 | Maize | nucleus | 21.0 | 39.32 |
| PGSC0003DMT400075890 | Potato | nucleus | 22.83 | 34.97 |
| Zm00001d022022_P001 | Maize | nucleus | 26.94 | 33.15 |
| VIT_01s0011g06200.t01 | Wine grape | nucleus | 36.07 | 32.11 |
| PGSC0003DMT400075898 | Potato | nucleus | 33.33 | 31.06 |
| Solyc11g011890.1.1 | Tomato | nucleus | 34.7 | 30.89 |
| PGSC0003DMT400034689 | Potato | nucleus | 34.7 | 30.77 |
| PGSC0003DMT400075895 | Potato | nucleus | 32.88 | 30.64 |
| Zm00001d006754_P001 | Maize | nucleus | 25.57 | 30.43 |
| Zm00001d030850_P001 | Maize | nucleus | 27.85 | 30.2 |
| Solyc04g014540.1.1 | Tomato | nucleus | 31.96 | 30.17 |
| PGSC0003DMT400060730 | Potato | nucleus | 31.96 | 29.66 |
| PGSC0003DMT400058615 | Potato | nucleus | 33.79 | 29.6 |
| KRG89273 | Soybean | nucleus | 31.51 | 28.99 |
| Zm00001d041332_P001 | Maize | nucleus | 27.85 | 28.91 |
| KRH17304 | Soybean | nucleus | 33.79 | 28.79 |
| KRH58613 | Soybean | nucleus | 32.42 | 28.51 |
| CDY07483 | Canola | nucleus | 31.96 | 28.46 |
| KRH72952 | Soybean | nucleus | 33.33 | 28.4 |
| Solyc01g005130.2.1 | Tomato | nucleus | 32.42 | 28.4 |
| KRH04587 | Soybean | cytosol | 25.57 | 28.28 |
| Zm00001d021386_P001 | Maize | nucleus | 22.83 | 28.25 |
| Bra004148.1-P | Field mustard | nucleus | 32.42 | 27.95 |
| Zm00001d031985_P001 | Maize | nucleus | 21.0 | 27.88 |
| CDY65468 | Canola | nucleus | 32.88 | 27.48 |
| Bra039750.1-P | Field mustard | nucleus | 32.88 | 27.48 |
| KRH42519 | Soybean | nucleus | 31.05 | 27.09 |
| CDY50321 | Canola | nucleus | 32.88 | 26.97 |
| AT1G66140.1 | Thale cress | nucleus | 31.96 | 26.92 |
| Zm00001d013743_P001 | Maize | nucleus | 27.85 | 26.87 |
| KRG97966 | Soybean | nucleus | 30.59 | 26.69 |
| KRH30916 | Soybean | nucleus | 30.14 | 26.51 |
| KRH49708 | Soybean | nucleus | 30.59 | 26.38 |
| Zm00001d015525_P001 | Maize | nucleus | 19.63 | 24.57 |
| Zm00001d033363_P001 | Maize | nucleus | 28.77 | 24.23 |
| GSMUA_Achr10P... | Banana | nucleus | 22.37 | 23.67 |
| CDY39248 | Canola | cytosol | 16.89 | 22.84 |
| Zm00001d050143_P001 | Maize | nucleus | 24.2 | 18.73 |
Protein Annotations
| EMBL:BT088212 | EMBL:EU976944 | EnsemblPlants:Zm00001d028371_P001 | EnsemblPlants:Zm00001d028371_T001 | EnsemblPlantsGene:Zm00001d028371 | EntrezGene:100285677 |
| Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf |
| InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF245 | PFscan:PS50157 | ProteinID:ONL95806.1 | ScanProsite:PS00028 |
| SEG:seg | SUPFAM:SSF57667 | UniParc:UPI000182FED7 | UniProt:B6UI79 | MapMan:15.5.15 | : |
Description
Zinc finger protein 1
Coordinates
chr1:-:32428519..32429178
Molecular Weight (calculated)
23089.9 Da
IEP (calculated)
5.271
GRAVY (calculated)
-0.295
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSKEMCQEP CDELSEISSQ EASNSSGLVS LDLTLTVAAA AAAESSTTDN SNSGGTPADA AAVAREPSRV FTCNYCQRKF FSSQALGGHQ NAHRRERTLA
101: RRTLRLDAAG PYGYYADVAS LPLYGSGLYP IGIQAHASMA AHPEQQQRHE DAAELRPARG LLSPMPFLVA DEAEMSFGWP GSFRPATAVA PAPAGSAVLN
201: SAGGVAVHAR EEPDLTLRL
101: RRTLRLDAAG PYGYYADVAS LPLYGSGLYP IGIQAHASMA AHPEQQQRHE DAAELRPARG LLSPMPFLVA DEAEMSFGWP GSFRPATAVA PAPAGSAVLN
201: SAGGVAVHAR EEPDLTLRL
001: MRPILDLEIE ASSGSSSSQV ASNLSPVGED YKPISLNLSL SFNNNNNNNL DLESSSLTLP LSSTSESSNP EQQQQQQPSV SKRVFSCNYC QRKFYSSQAL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL
Arabidopsis Description
ZFP4Zinc finger protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q39263]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.