Factsheet for Solyc11g011890.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034689	Potato	nucleus	98.37	97.98
Solyc04g014540.1.1	Tomato	nucleus	63.82	67.67
KRH17304	Soybean	nucleus	57.72	55.25
KRH72952	Soybean	nucleus	57.32	54.86
KRG97966	Soybean	nucleus	51.22	50.2
Solyc01g005130.2.1	Tomato	nucleus	47.97	47.2
KRH30916	Soybean	nucleus	47.56	46.99
VIT_01s0011g06200.t01	Wine grape	nucleus	45.94	45.94
GSMUA_Achr6P11350_001	Banana	nucleus	41.06	45.5
Solyc01g107430.2.1	Tomato	nucleus	26.42	37.57
Solyc10g049870.1.1	Tomato	nucleus	25.61	36.63
Solyc07g006880.1.1	Tomato	nucleus, plastid	23.17	34.97
Zm00001d047968_P001	Maize	nucleus	30.08	34.91
Zm00001d028371_P001	Maize	nucleus	30.89	34.7
TraesCS4D01G230300.1	Wheat	nucleus	30.08	33.95
EER92577	Sorghum	cytosol, mitochondrion, nucleus	31.3	33.62
Os03t0239300-01	Rice	nucleus	32.52	33.33
HORVU4Hr1G064150.1	Barley	plastid	31.71	32.91
TraesCS4A01G073200.1	Wheat	nucleus	32.11	32.64
TraesCS4B01G229200.1	Wheat	nucleus	32.11	32.51
Solyc06g068390.1.1	Tomato	nucleus	21.54	29.94
Solyc03g117070.1.1	Tomato	nucleus	27.64	29.69
HORVU0Hr1G008920.1	Barley	mitochondrion	5.69	18.42

Protein Annotations

EnsemblPlants:Solyc11g011890.1.1	EnsemblPlantsGene:Solyc11g011890.1	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR013087	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF239	PFscan:PS50157	ScanProsite:PS00028	SEG:seg
SUPFAM:SSF57667	UniParc:UPI0002769DDA	UniProt:K4D5Z4	MapMan:15.5.15	:	:

Description

No Description!

Coordinates

chr11:-:4830659..4831399

Molecular Weight (calculated)

27219.9 Da

IEP (calculated)

6.393

GRAVY (calculated)

-0.439

Length

246 amino acids

Sequence
(BLAST)

001: MQTPRFNLEV EALFEDDSDI TSQVASNICV GETFTDPPKN RVIDFTQLSS EHVSLDLSLS QDSIGGFSVS STSESSNELA TTQTSVSGPG FQRVFSCNFC
101: QRKFYSSQAL GGHQNAHKRE RTLAKRAMRM GVFSERYANL ASLPLHGSTI RSLGIKAHAS LHQMSAPAIR PLDFKTSARF EYGNRQSPPL YMENDDQLVL
201: WPGSFRQVTN PGTSHTNFSL DGCSNMTLTP YVEKDEPIAP DLTLRL

Best Arabidopsis Sequence Match ( AT1G66140.1 )
(BLAST)

001: MRPILDLEIE ASSGSSSSQV ASNLSPVGED YKPISLNLSL SFNNNNNNNL DLESSSLTLP LSSTSESSNP EQQQQQQPSV SKRVFSCNYC QRKFYSSQAL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL

Arabidopsis Description

ZFP4Zinc finger protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q39263]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.