Factsheet for VIT_01s0011g06200.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72952	Soybean	nucleus	56.91	54.47
KRH17304	Soybean	nucleus	56.5	54.09
KRG97966	Soybean	nucleus	54.47	53.39
KRH30916	Soybean	nucleus	50.81	50.2
PGSC0003DMT400034689	Potato	nucleus	46.34	46.15
GSMUA_Achr6P11350_001	Banana	nucleus	41.46	45.95
Solyc11g011890.1.1	Tomato	nucleus	45.94	45.94
Solyc04g014540.1.1	Tomato	nucleus	43.09	45.69
PGSC0003DMT400060730	Potato	nucleus	43.5	45.34
VIT_07s0129g00670.t01	Wine grape	nucleus	30.08	38.34
VIT_11s0052g01120.t01	Wine grape	nucleus	23.17	37.01
VIT_18s0001g09590.t01	Wine grape	nucleus	28.86	36.79
Zm00001d047968_P001	Maize	nucleus	31.3	36.32
Zm00001d028371_P001	Maize	nucleus	32.11	36.07
VIT_03s0091g00260.t01	Wine grape	nucleus	26.42	34.39
EER92577	Sorghum	cytosol, mitochondrion, nucleus	31.71	34.06
TraesCS4D01G230300.1	Wheat	nucleus	29.67	33.49
Os03t0239300-01	Rice	nucleus	32.11	32.92
HORVU4Hr1G064150.1	Barley	plastid	31.71	32.91
TraesCS4A01G073200.1	Wheat	nucleus	31.71	32.23
VIT_09s0002g09080.t01	Wine grape	nucleus	34.15	31.46
TraesCS4B01G229200.1	Wheat	nucleus	30.89	31.28
VIT_04s0008g05930.t01	Wine grape	nucleus	31.3	26.92
HORVU0Hr1G008920.1	Barley	mitochondrion	6.5	21.05

Protein Annotations

EntrezGene:100249205	wikigene:100249205	MapMan:15.5.15	Gene3D:3.30.160.60	ProteinID:CCB50760	ProteinID:CCB50760.1
UniProt:F6HFB1	EMBL:FN595752	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR013087	EntrezGene:LOC100249205	wikigene:LOC100249205
ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF313	SUPFAM:SSF57667	TIGR:TC52875
UniParc:UPI00019828F6	ArrayExpress:VIT_01s0011g06200	EnsemblPlantsGene:VIT_01s0011g06200	EnsemblPlants:VIT_01s0011g06200.t01	unigene:Vvi.9162	RefSeq:XP_002285121
RefSeq:XP_002285121.1	RefSeq:XP_010648862.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:6006165..6010160

Molecular Weight (calculated)

26778.3 Da

IEP (calculated)

5.350

GRAVY (calculated)

-0.491

Length

246 amino acids

Sequence
(BLAST)

001: MEPPNYNVES EDESEVSSQV ASNVSIQETS SDPSKDSTTT SSCLTNLIKL QPDQGSVSLD LTLCFNPNDT KLKGMGESSS DAVAQAPVAT APKVFSCNYC
101: RRKFFSSQAL GGHQNAHKRE RTLAKRAMRM GMFADRYTSL SSLPLHGSAF RSLGIEAHSS LHQRMVPLER PDTRGGARFE QGYYGLPVFI EDEEAELFWP
201: GSFRQIGERV GGSAIPELAQ GPNINFVPMA PPPTTDSSSP DLTLKL

Best Arabidopsis Sequence Match ( AT1G66140.1 )
(BLAST)

001: MRPILDLEIE ASSGSSSSQV ASNLSPVGED YKPISLNLSL SFNNNNNNNL DLESSSLTLP LSSTSESSNP EQQQQQQPSV SKRVFSCNYC QRKFYSSQAL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL

Arabidopsis Description

ZFP4Zinc finger protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q39263]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.