Factsheet for VIT_04s0008g05930.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g09080.t01	Wine grape	nucleus	53.15	56.93
VIT_11s0052g01120.t01	Wine grape	nucleus	24.13	44.81
VIT_03s0091g00260.t01	Wine grape	nucleus	23.43	35.45
VIT_07s0129g00670.t01	Wine grape	nucleus	23.43	34.72
VIT_01s0011g06200.t01	Wine grape	nucleus	26.92	31.3
VIT_18s0001g09590.t01	Wine grape	nucleus	20.98	31.09

Protein Annotations

EntrezGene:100245739	wikigene:100245739	MapMan:15.5.15	Gene3D:3.30.160.60	ProteinID:CCB46830	ProteinID:CCB46830.1
ncoils:Coil	UniProt:F6H3J5	EMBL:FN595231	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR013087	EntrezGene:LOC100245739
wikigene:LOC100245739	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF217	SUPFAM:SSF57667
UniParc:UPI0001983163	ArrayExpress:VIT_04s0008g05930	EnsemblPlantsGene:VIT_04s0008g05930	EnsemblPlants:VIT_04s0008g05930.t01	unigene:Vvi.16515	unigene:Vvi.22855
RefSeq:XP_002282938	RefSeq:XP_002282938.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:

Description

No Description!

Coordinates

chr4:+:5630104..5632495

Molecular Weight (calculated)

31545.9 Da

IEP (calculated)

6.389

GRAVY (calculated)

-0.717

Length

286 amino acids

Sequence
(BLAST)

001: MEQLRKEPCP SETSTIIIST PEAASCPDKP SQSPKEINLE EEEEEEEEED HEKKTKVDLL FNLELHSKDA ADHGFNTELN LIDCLNTDSS QTSSEIPQPA
101: DAEPRVFSCN YCQRKFYSSQ ALGGHQNAHK RERTLAKRGQ RLGAPMVAAA TAFGHPYFHH QHYSSMASLP LHGAYNRSLG IQVHSMIHKP SLTTPSSGSG
201: NLYGHRSWSR PPIDQQPAVG RLAVENCHEG VTAGPLSRGG IGRFDTVRMM INSQANEGIG GFCWTGGGRL KTNQDELQKL DLSLKL

Best Arabidopsis Sequence Match ( AT5G10970.1 )
(BLAST)

001: MDSSSGKPRS SDSSCIISAS TSLQFSDSPK LSLENYNIDT VAAQEEDDHD QKEGVEGIKL DLMLAGYDSS QPQLNQELNL LDCLETGVVT PSFNGSTSTE
101: QKLFSCNYCQ RTFYSSQALG GHQNAHKRER TLAKRGQRMA SAAAFGHPYG FAPVPFHGQY SNRTLGIQAH SMSHKPSSYN VYGGEYGQIN WSRIPLVQQP
201: AIAKLTSTEN HYNHHQMMIA PPLTSTCENI GRFDVGRIPV EFPTSELWQR GEELLKPAEE EKQKNLDLSL KL

Arabidopsis Description

C2H2 and C2HC zinc fingers superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LEU3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.