Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0091g00260.t01 | Wine grape | nucleus | 58.03 | 59.26 |
| VIT_18s0001g09590.t01 | Wine grape | nucleus | 54.4 | 54.4 |
| KRH58019 | Soybean | nucleus | 50.78 | 49.25 |
| KRH57480 | Soybean | nucleus | 47.15 | 45.73 |
| KRH04497 | Soybean | nucleus | 49.22 | 45.24 |
| GSMUA_Achr4P10880_001 | Banana | nucleus | 42.49 | 43.85 |
| GSMUA_Achr4P03360_001 | Banana | nucleus | 38.34 | 41.11 |
| TraesCS5A01G071900.1 | Wheat | nucleus | 38.34 | 39.36 |
| GSMUA_Achr10P... | Banana | nucleus | 36.79 | 39.01 |
| TraesCS5D01G084600.1 | Wheat | nucleus | 37.82 | 38.83 |
| TraesCS5B01G078100.1 | Wheat | nucleus | 37.82 | 38.83 |
| Os12t0581900-01 | Rice | nucleus | 38.86 | 38.46 |
| HORVU5Hr1G018830.1 | Barley | nucleus | 37.82 | 38.22 |
| GSMUA_Achr6P24010_001 | Banana | nucleus | 34.2 | 37.93 |
| TraesCS2A01G183800.1 | Wheat | nucleus | 34.2 | 37.71 |
| HORVU2Hr1G034650.1 | Barley | nucleus | 34.2 | 36.87 |
| TraesCS2B01G210500.1 | Wheat | nucleus | 34.2 | 36.87 |
| TraesCS2D01G191700.1 | Wheat | nucleus | 34.2 | 36.87 |
| Zm00001d035257_P001 | Maize | nucleus | 22.28 | 36.75 |
| Zm00001d002745_P001 | Maize | nucleus | 22.28 | 36.75 |
| Zm00001d016069_P001 | Maize | nucleus | 22.28 | 36.75 |
| Zm00001d025350_P001 | Maize | nucleus | 22.28 | 36.75 |
| Zm00001d052006_P001 | Maize | nucleus | 22.28 | 36.75 |
| Zm00001d035262_P001 | Maize | nucleus | 22.28 | 36.75 |
| Zm00001d039773_P001 | Maize | nucleus | 22.28 | 36.75 |
| Zm00001d022022_P001 | Maize | nucleus | 33.68 | 36.52 |
| Zm00001d030850_P001 | Maize | nucleus | 37.82 | 36.14 |
| Zm00001d006367_P001 | Maize | nucleus | 21.76 | 35.9 |
| EER97478 | Sorghum | nucleus | 32.64 | 35.39 |
| Zm00001d006754_P001 | Maize | nucleus | 33.16 | 34.78 |
| Zm00001d041332_P001 | Maize | nucleus | 37.82 | 34.6 |
| HORVU4Hr1G013330.1 | Barley | nucleus | 38.86 | 33.78 |
| TraesCS4D01G077000.1 | Wheat | nucleus | 39.38 | 33.63 |
| TraesCS4B01G078400.1 | Wheat | nucleus | 38.86 | 33.33 |
| Zm00001d013743_P001 | Maize | nucleus | 37.82 | 32.16 |
| Os07t0593000-01 | Rice | nucleus | 31.09 | 31.91 |
| Os03t0607700-01 | Rice | nucleus | 38.86 | 30.61 |
| VIT_01s0011g06200.t01 | Wine grape | nucleus | 38.34 | 30.08 |
| EER91243 | Sorghum | nucleus | 39.38 | 28.79 |
| Zm00001d033363_P001 | Maize | nucleus | 38.34 | 28.46 |
| VIT_11s0052g01120.t01 | Wine grape | nucleus | 21.76 | 27.27 |
| VIT_09s0002g09080.t01 | Wine grape | nucleus | 37.31 | 26.97 |
| VIT_04s0008g05930.t01 | Wine grape | nucleus | 34.72 | 23.43 |
Protein Annotations
| EntrezGene:100245648 | wikigene:100245648 | MapMan:15.5.15 | Gene3D:3.30.160.60 | EMBL:AM469309 | ProteinID:CAN77233 |
| ProteinID:CAN77233.1 | ProteinID:CCB57775 | ProteinID:CCB57775.1 | ncoils:Coil | UniProt:F6HSW5 | EMBL:FN596246 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:IPR013087 | EntrezGene:LOC100245648 | wikigene:LOC100245648 | ScanProsite:PS00028 | PFscan:PS50157 |
| PANTHER:PTHR26374 | PANTHER:PTHR26374:SF228 | SUPFAM:SSF57667 | UniParc:UPI00019839C2 | ArrayExpress:VIT_07s0129g00670 | EnsemblPlantsGene:VIT_07s0129g00670 |
| EnsemblPlants:VIT_07s0129g00670.t01 | RefSeq:XP_002279158 | RefSeq:XP_002279158.1 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | : |
Description
No Description!
Coordinates
chr7:-:15914286..15914867
Molecular Weight (calculated)
21467.9 Da
IEP (calculated)
6.631
GRAVY (calculated)
-0.819
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MTISQREEEA NEVSSNNQDA ESKTRSDDEK TSGDDNLGEW LSLSLSRNEA FTTGDGDPQS KPAGNKIFSC NFCMRKFFSS QALGGHQNAH KRERGAAKRY
101: QSHRMMMATM GFPLNSLTIR SLGAQPHSLA HKPGREGTEV AARFNDPNTG FRMAWTPFVM EEAMDSIWPG SFHVDKLPSQ ASDQHKLDLN LSL
101: QSHRMMMATM GFPLNSLTIR SLGAQPHSLA HKPGREGTEV AARFNDPNTG FRMAWTPFVM EEAMDSIWPG SFHVDKLPSQ ASDQHKLDLN LSL
001: MEPSIKGDQE MLKIKKQGHQ DLELGLTLLS RGTATSSELN LIDSFKTSSS STSHHQHQQE QLADPRVFSC NYCQRKFYSS QALGGHQNAH KRERTLAKRG
101: QYYKMTLSSL PSSAFAFGHG SVSRFASMAS LPLHGSVNNR STLGIQAHST IHKPSFLGRQ TTSLSHVFKQ SIHQKPTIGK MLPEKFHLEV AGNNNSNMVA
201: AKLERIGHFK SNQEDHNQFK KIDLTLKL
101: QYYKMTLSSL PSSAFAFGHG SVSRFASMAS LPLHGSVNNR STLGIQAHST IHKPSFLGRQ TTSLSHVFKQ SIHQKPTIGK MLPEKFHLEV AGNNNSNMVA
201: AKLERIGHFK SNQEDHNQFK KIDLTLKL
Arabidopsis Description
ZFP1At1g80730 [Source:UniProtKB/TrEMBL;Acc:Q0V814]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.