Factsheet for TraesCS5B01G078100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G084600.1	Wheat	nucleus	98.4	98.4
TraesCS5A01G071900.1	Wheat	nucleus	96.81	96.81
HORVU5Hr1G018830.1	Barley	nucleus	97.87	96.34
Os12t0581900-01	Rice	nucleus	80.32	77.44
Zm00001d041332_P001	Maize	nucleus	65.96	58.77
Zm00001d030850_P001	Maize	nucleus	61.17	56.93
TraesCS4B01G078400.1	Wheat	nucleus	61.17	51.11
Zm00001d013743_P001	Maize	nucleus	60.11	49.78
Zm00001d033363_P001	Maize	nucleus	63.3	45.77
EER91243	Sorghum	nucleus	63.83	45.45
VIT_18s0001g09590.t01	Wine grape	nucleus	39.36	38.34
VIT_07s0129g00670.t01	Wine grape	nucleus	38.83	37.82
VIT_03s0091g00260.t01	Wine grape	nucleus	37.77	37.57
PGSC0003DMT400066536	Potato	nucleus	34.04	36.99
Solyc01g107430.2.1	Tomato	nucleus	34.04	36.99
GSMUA_Achr10P...	Banana	nucleus	35.11	36.26
KRH35714	Soybean	nucleus	36.17	36.17
PGSC0003DMT400059824	Potato	nucleus	32.45	35.47
Solyc10g049870.1.1	Tomato	nucleus	31.91	34.88
KRG91058	Soybean	nucleus	35.11	34.55
GSMUA_Achr6P24010_001	Banana	nucleus	31.91	34.48
TraesCS2B01G210500.1	Wheat	nucleus	31.91	33.52
KRH58019	Soybean	nucleus	32.45	30.65
TraesCS7B01G174400.1	Wheat	nucleus	24.47	30.07
TraesCS5B01G363400.1	Wheat	nucleus	23.94	29.61
KRH57480	Soybean	nucleus	30.32	28.64
KRH04497	Soybean	nucleus	31.38	28.1
TraesCS5B01G363300.1	Wheat	nucleus	24.47	26.9
TraesCS5B01G363600.1	Wheat	nucleus	20.74	26.17
TraesCS4B01G229200.1	Wheat	nucleus	30.32	23.46
TraesCS5B01G363200.1	Wheat	mitochondrion	24.47	22.12
TraesCS3B01G560300.1	Wheat	nucleus	23.94	17.72

Protein Annotations

EnsemblPlants:TraesCS5B01G078100.1	EnsemblPlantsGene:TraesCS5B01G078100	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF309	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667	MapMan:15.5.15	:	:

Description

No Description!

Coordinates

chr5B:+:94092719..94093653

Molecular Weight (calculated)

20606.0 Da

IEP (calculated)

7.114

GRAVY (calculated)

-0.686

Length

188 amino acids

Sequence
(BLAST)

001: MEQADEASSV NKGSPERLTI DQDDGASWLS LTVGANGSAE AAANCSEPEP DPEPKPSAAP HKVFSCNFCM RKFFSSQALG GHQNAHKRER SAAKRSYHAQ
101: RMVMGLPLEA HAAFVQSLRV SQSSVIQKSS QPAQIRTAPR FHEDGMTWAT IPCEEVLNST WPGSFRARTQ PSEQQPSEQS KIDLNLRL

Best Arabidopsis Sequence Match ( AT1G24625.1 )
(BLAST)

001: MTESDDASRE TPASRGGEAS SNQDLSKPES NHVSLDLKLN DTFNDDTKST KCEANPRVFS CNYCRRKFYS SQALGGHQNA HKRERTMAKR AMHMGRMFGH
101: HHRPYTYTSS SLGMQAHSGL LHHTLSQPQP LVSRFHHQGY FGNTVPLFFD YDDGGSDFFW PGSFRQVVEE AEAPVVVVAS TESGLDLNSV AANGGVDNNS
201: SKPDLTLRL

Arabidopsis Description

ZFP7Zinc finger protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39266]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.