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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d033363_P001 Maize nucleus 75.38 76.54
Zm00001d013743_P001 Maize nucleus 65.53 76.21
TraesCS5A01G071900.1 Wheat nucleus 45.83 64.36
TraesCS5B01G078100.1 Wheat nucleus 45.45 63.83
TraesCS4D01G077000.1 Wheat nucleus 54.55 63.72
HORVU5Hr1G018830.1 Barley nucleus 45.83 63.35
TraesCS5D01G084600.1 Wheat nucleus 45.08 63.3
TraesCS4B01G078400.1 Wheat nucleus 53.79 63.11
HORVU4Hr1G013330.1 Barley nucleus 53.03 63.06
Os12t0581900-01 Rice nucleus 44.7 60.51
Os03t0607700-01 Rice nucleus 50.76 54.69
VIT_18s0001g09590.t01 Wine grape nucleus 28.79 39.38
VIT_07s0129g00670.t01 Wine grape nucleus 28.79 39.38
KRH35714 Soybean nucleus 28.03 39.36
Solyc01g107430.2.1 Tomato nucleus 25.38 38.73
KRG91058 Soybean nucleus 27.65 38.22
PGSC0003DMT400066536 Potato nucleus 25.0 38.15
VIT_03s0091g00260.t01 Wine grape nucleus 27.27 38.1
EER97478 Sorghum nucleus 25.38 37.64
GSMUA_Achr10P... Banana nucleus 25.38 36.81
GSMUA_Achr6P24010_001 Banana nucleus 24.24 36.78
PGSC0003DMT400059824 Potato nucleus 23.86 36.63
Solyc10g049870.1.1 Tomato nucleus 23.48 36.05
KRH58019 Soybean nucleus 26.52 35.18
OQU80725 Sorghum nucleus 20.45 32.53
KRH04497 Soybean nucleus 25.76 32.38
KRH57480 Soybean nucleus 23.86 31.66
EER99346 Sorghum nucleus 19.32 30.18
OQU84499 Sorghum nucleus 21.21 28.72
EER92577 Sorghum cytosol, mitochondrion, nucleus 24.62 28.38
EES00097 Sorghum nucleus 20.08 17.91
Protein Annotations
MapMan:15.5.15Gene3D:3.30.160.60EntrezGene:8064508UniProt:C5WT58EnsemblPlants:EER91243ProteinID:EER91243
ProteinID:EER91243.1GO:GO:0003674GO:GO:0003676GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634InterPro:IPR013087ScanProsite:PS00028PFscan:PS50157PANTHER:PTHR26374
PANTHER:PTHR26374:SF228EnsemblPlantsGene:SORBI_3001G169700SUPFAM:SSF57667UniParc:UPI0001A8221ERefSeq:XP_002464245.1InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_typeSEG:seg::::
Description
hypothetical protein
Coordinates
chr1:+:14154981..14157759
Molecular Weight (calculated)
27525.8 Da
IEP (calculated)
6.862
GRAVY (calculated)
-0.486
Length
264 amino acids
Sequence
(BLAST)
001: MQDLLGMEQT DEASSVNEQS AERRQPSVVA GGGAMAWLDL TLAVNASSRD EFPAPDGGDS SSAGSDGEPP PAKPDASASA SPSPPPPANP TPHKVFSCNF
101: CMRKFFSSQA LGGHQNAHKR ERSAAKRSTS AYHHHLHAQQ RMVMAGLPLE AHAALVRAAL RVSPASTVIH KAASASQDLA AARASAAAAA AGAVATSTAP
201: RFHDGDSSNA STAATPWATA LLYEEPVSST WPGSFRMRAQ PEPPSSEQQQ ASEQSKKIDL DLRL
Best Arabidopsis Sequence Match ( AT1G24625.1 )
(BLAST)
001: MTESDDASRE TPASRGGEAS SNQDLSKPES NHVSLDLKLN DTFNDDTKST KCEANPRVFS CNYCRRKFYS SQALGGHQNA HKRERTMAKR AMHMGRMFGH
101: HHRPYTYTSS SLGMQAHSGL LHHTLSQPQP LVSRFHHQGY FGNTVPLFFD YDDGGSDFFW PGSFRQVVEE AEAPVVVVAS TESGLDLNSV AANGGVDNNS
201: SKPDLTLRL
Arabidopsis Description
ZFP7Zinc finger protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39266]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.