Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d015525_P001 | Maize | nucleus | 60.0 | 66.86 |
| HORVU0Hr1G015760.1 | Barley | nucleus | 38.97 | 43.43 |
| Os02t0182300-00 | Rice | cytosol, mitochondrion, peroxisome | 43.08 | 43.3 |
| TraesCS6D01G135200.1 | Wheat | nucleus | 37.44 | 42.2 |
| TraesCS6A01G145900.1 | Wheat | nucleus | 38.97 | 41.08 |
| EER99346 | Sorghum | nucleus | 25.64 | 29.59 |
| Solyc06g068390.1.1 | Tomato | nucleus | 25.64 | 28.25 |
| EER97478 | Sorghum | nucleus | 24.1 | 26.4 |
| OQU80725 | Sorghum | nucleus | 22.05 | 25.9 |
| EER92577 | Sorghum | cytosol, mitochondrion, nucleus | 29.74 | 25.33 |
| Bra035157.1-P | Field mustard | nucleus | 26.15 | 23.83 |
| CDY39947 | Canola | nucleus | 26.15 | 23.18 |
| Bra008445.1-P | Field mustard | nucleus | 25.64 | 23.04 |
| PGSC0003DMT400073330 | Potato | nucleus | 23.59 | 22.89 |
| CDX87338 | Canola | nucleus | 26.15 | 22.77 |
| Bra003582.1-P | Field mustard | nucleus | 25.13 | 22.69 |
| CDX79357 | Canola | nucleus | 25.64 | 22.12 |
| CDY66132 | Canola | nucleus | 25.64 | 21.93 |
| AT1G80730.1 | Thale cress | nucleus | 25.64 | 21.93 |
| CDX67963 | Canola | nucleus | 25.13 | 21.68 |
| KRH44531 | Soybean | nucleus | 24.62 | 21.33 |
| EER91243 | Sorghum | nucleus | 28.72 | 21.21 |
| CDY71759 | Canola | nucleus | 24.62 | 21.15 |
| GSMUA_Achr8P29430_001 | Banana | nucleus | 27.18 | 20.62 |
| AT5G25160.1 | Thale cress | nucleus | 24.62 | 20.43 |
| Bra009000.1-P | Field mustard | nucleus | 25.13 | 20.25 |
| CDX97070 | Canola | nucleus | 25.13 | 20.25 |
| CDX69795 | Canola | nucleus | 25.13 | 20.25 |
| GSMUA_Achr5P22810_001 | Banana | nucleus | 26.67 | 20.23 |
| VIT_09s0002g09080.t01 | Wine grape | nucleus | 27.69 | 20.22 |
| GSMUA_Achr2P05140_001 | Banana | nucleus | 26.15 | 20.16 |
| GSMUA_Achr6P01990_001 | Banana | nucleus | 25.13 | 19.76 |
| Bra020486.1-P | Field mustard | nucleus | 25.13 | 19.76 |
| CDY05474 | Canola | nucleus | 25.13 | 19.76 |
| KRH23633 | Soybean | nucleus | 23.08 | 19.74 |
| CDX88160 | Canola | nucleus | 24.62 | 19.51 |
| CDY05377 | Canola | nucleus | 24.62 | 19.35 |
| Bra009822.1-P | Field mustard | nucleus | 24.62 | 18.9 |
| KRH47378 | Soybean | nucleus | 25.13 | 18.77 |
| KRH61695 | Soybean | nucleus | 26.15 | 18.15 |
| Bra036535.1-P | Field mustard | nucleus | 23.59 | 18.11 |
| CDY19813 | Canola | nucleus | 23.59 | 18.11 |
| KRH09666 | Soybean | nucleus | 24.62 | 18.05 |
| AT5G10970.1 | Thale cress | nucleus | 25.13 | 18.01 |
| KRH52363 | Soybean | nucleus | 25.64 | 17.06 |
| EES00097 | Sorghum | nucleus | 24.1 | 15.88 |
| KRH15782 | Soybean | nucleus | 25.13 | 15.71 |
| KRH05270 | Soybean | nucleus | 25.64 | 15.24 |
| CDX87097 | Canola | plastid | 7.18 | 10.07 |
Protein Annotations
| EnsemblPlants:OQU84499 | EnsemblPlantsGene:SORBI_3004G066700 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF311 | PFscan:PS50157 | ProteinID:OQU84499 |
| ProteinID:OQU84499.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI000B8BAF60 | UniProt:A0A1Z5RLP2 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:5437753..5438361
Molecular Weight (calculated)
20135.9 Da
IEP (calculated)
8.519
GRAVY (calculated)
-0.151
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAEVDKQRV GFTGLNGGGN GHRGHHRAVS AAALVELNLL AGMVSTGCAR QNTAQPPPVV VVLVPDVARS PAAVPAVESE PPQLFACHYC RRQFYSSQAL
101: GGHQNAHKRE RTLARHRGDA AAPLGLGHDH MYAARGGGGA PFAVAAPAPA LEWNNDAWSG QAAPAAVVAV GERLSTGPGV GAAQELPKLD LTLKL
101: GGHQNAHKRE RTLARHRGDA AAPLGLGHDH MYAARGGGGA PFAVAAPAPA LEWNNDAWSG QAAPAAVVAV GERLSTGPGV GAAQELPKLD LTLKL
001: MDSSSGKPRS SDSSCIISAS TSLQFSDSPK LSLENYNIDT VAAQEEDDHD QKEGVEGIKL DLMLAGYDSS QPQLNQELNL LDCLETGVVT PSFNGSTSTE
101: QKLFSCNYCQ RTFYSSQALG GHQNAHKRER TLAKRGQRMA SAAAFGHPYG FAPVPFHGQY SNRTLGIQAH SMSHKPSSYN VYGGEYGQIN WSRIPLVQQP
201: AIAKLTSTEN HYNHHQMMIA PPLTSTCENI GRFDVGRIPV EFPTSELWQR GEELLKPAEE EKQKNLDLSL KL
101: QKLFSCNYCQ RTFYSSQALG GHQNAHKRER TLAKRGQRMA SAAAFGHPYG FAPVPFHGQY SNRTLGIQAH SMSHKPSSYN VYGGEYGQIN WSRIPLVQQP
201: AIAKLTSTEN HYNHHQMMIA PPLTSTCENI GRFDVGRIPV EFPTSELWQR GEELLKPAEE EKQKNLDLSL KL
Arabidopsis Description
C2H2 and C2HC zinc fingers superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LEU3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.