Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G145900.1 | Wheat | nucleus | 88.44 | 82.7 |
| HORVU0Hr1G015760.1 | Barley | nucleus | 79.77 | 78.86 |
| Os02t0182300-00 | Rice | cytosol, mitochondrion, peroxisome | 46.82 | 41.75 |
| OQU84499 | Sorghum | nucleus | 42.2 | 37.44 |
| Zm00001d015525_P001 | Maize | nucleus | 35.84 | 35.43 |
| TraesCS5D01G369800.1 | Wheat | nucleus | 24.86 | 27.22 |
| TraesCS7D01G276700.1 | Wheat | nucleus | 23.7 | 26.8 |
| TraesCS5D01G369900.1 | Wheat | nucleus | 26.01 | 26.63 |
| Solyc06g068390.1.1 | Tomato | nucleus | 27.17 | 26.55 |
| TraesCS2D01G191700.1 | Wheat | nucleus | 26.01 | 25.14 |
| TraesCS5D01G084600.1 | Wheat | nucleus | 26.59 | 24.47 |
| Bra035157.1-P | Field mustard | nucleus | 28.9 | 23.36 |
| KRH44531 | Soybean | nucleus | 30.06 | 23.11 |
| CDY39947 | Canola | nucleus | 28.9 | 22.73 |
| Bra008445.1-P | Field mustard | nucleus | 28.32 | 22.58 |
| CDX87338 | Canola | nucleus | 28.9 | 22.32 |
| PGSC0003DMT400073330 | Potato | nucleus | 25.43 | 21.89 |
| Bra003582.1-P | Field mustard | nucleus | 27.17 | 21.76 |
| TraesCS4D01G077000.1 | Wheat | nucleus | 28.32 | 21.68 |
| TraesCS4D01G230300.1 | Wheat | nucleus | 27.17 | 21.56 |
| CDY66132 | Canola | nucleus | 28.32 | 21.49 |
| AT1G80730.1 | Thale cress | nucleus | 28.32 | 21.49 |
| KRH23633 | Soybean | nucleus | 27.75 | 21.05 |
| CDX79357 | Canola | nucleus | 27.17 | 20.8 |
| CDX67963 | Canola | nucleus | 27.17 | 20.8 |
| CDY71759 | Canola | nucleus | 27.17 | 20.7 |
| CDX97070 | Canola | nucleus | 28.32 | 20.25 |
| CDX69795 | Canola | nucleus | 28.32 | 20.25 |
| Bra009000.1-P | Field mustard | nucleus | 28.32 | 20.25 |
| GSMUA_Achr2P05140_001 | Banana | nucleus | 29.48 | 20.16 |
| GSMUA_Achr8P29430_001 | Banana | nucleus | 29.48 | 19.84 |
| KRH47378 | Soybean | nucleus | 29.48 | 19.54 |
| VIT_09s0002g09080.t01 | Wine grape | nucleus | 30.06 | 19.48 |
| TraesCS5D01G354900.1 | Wheat | nucleus | 24.86 | 19.37 |
| GSMUA_Achr6P01990_001 | Banana | nucleus | 27.75 | 19.35 |
| GSMUA_Achr5P22810_001 | Banana | nucleus | 28.32 | 19.07 |
| AT5G25160.1 | Thale cress | nucleus | 25.43 | 18.72 |
| CDX88160 | Canola | nucleus | 26.59 | 18.7 |
| KRH09666 | Soybean | nucleus | 28.32 | 18.42 |
| TraesCS5D01G355400.1 | Wheat | nucleus | 25.43 | 18.18 |
| CDY05474 | Canola | nucleus | 26.01 | 18.15 |
| Bra020486.1-P | Field mustard | nucleus | 26.01 | 18.15 |
| Bra009822.1-P | Field mustard | nucleus | 26.59 | 18.11 |
| CDY19813 | Canola | nucleus | 26.59 | 18.11 |
| Bra036535.1-P | Field mustard | nucleus | 26.59 | 18.11 |
| AT5G10970.1 | Thale cress | nucleus | 28.32 | 18.01 |
| CDY05377 | Canola | nucleus | 25.43 | 17.74 |
| TraesCS3D01G505300.1 | Wheat | nucleus | 26.01 | 17.44 |
| KRH61695 | Soybean | nucleus | 27.75 | 17.08 |
| KRH15782 | Soybean | nucleus | 27.75 | 15.38 |
| KRH52363 | Soybean | nucleus | 26.01 | 15.36 |
| KRH05270 | Soybean | nucleus | 28.9 | 15.24 |
| CDX87097 | Canola | plastid | 9.83 | 12.23 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G135200.1 | EnsemblPlantsGene:TraesCS6D01G135200 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF311 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | MapMan:15.5.15 | : | : |
Description
No Description!
Coordinates
chr6D:+:103012640..103013161
Molecular Weight (calculated)
18503.7 Da
IEP (calculated)
7.197
GRAVY (calculated)
-0.528
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEREKGGGE GRPAAGLVVG SGGEGSLRPV ELDLIGTVGA DSPLLVAPAT LSAEAEQEPR QLFRCHYCRR DFYSSQALGG HQNAHKRERT LARRHAGVPA
101: PLGQHGYAFA IHGGLGAPGP GQLPSWFRAF NVRRTAVAAF GEDEGWRRRS DENVGHCSDG DQELPNLDLT LKL
101: PLGQHGYAFA IHGGLGAPGP GQLPSWFRAF NVRRTAVAAF GEDEGWRRRS DENVGHCSDG DQELPNLDLT LKL
001: MDASIVSSST AFPYQDSLNQ SIEDEERDVH NSSHELNLID CIDDTTSIVN ESTTSTEQKL FSCNYCQRTF YSSQALGGHQ NAHKRERTLA KRGQRMAASA
101: SAFGHPYGFS PLPFHGQYNN HRSLGIQAHS ISHKLSSYNG FGGHYGQINW SRLPFDQQPA IGKFPSMDNF HHHHHQMMMM APSVNSRSNN IDSPSNTGRV
201: LEGSPTLEQW HGDKGLLLST SHHEEQQKLD LSLKL
101: SAFGHPYGFS PLPFHGQYNN HRSLGIQAHS ISHKLSSYNG FGGHYGQINW SRLPFDQQPA IGKFPSMDNF HHHHHQMMMM APSVNSRSNN IDSPSNTGRV
201: LEGSPTLEQW HGDKGLLLST SHHEEQQKLD LSLKL
Arabidopsis Description
ZFP3ZFP3 zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q0WT56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.