Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020486.1-P | Field mustard | nucleus | 96.37 | 96.37 |
| CDY05474 | Canola | nucleus | 96.37 | 96.37 |
| CDY19813 | Canola | nucleus | 81.85 | 79.92 |
| CDX87097 | Canola | plastid | 44.76 | 79.86 |
| AT5G25160.1 | Thale cress | nucleus | 72.98 | 77.02 |
| CDX88160 | Canola | nucleus | 71.77 | 72.36 |
| CDX97070 | Canola | nucleus | 57.66 | 59.09 |
| CDX69795 | Canola | nucleus | 57.26 | 58.68 |
| VIT_09s0002g09080.t01 | Wine grape | nucleus | 45.56 | 42.32 |
| CDY39947 | Canola | nucleus | 34.68 | 39.09 |
| CDY66132 | Canola | nucleus | 35.89 | 39.04 |
| CDX87338 | Canola | nucleus | 34.68 | 38.39 |
| CDX79357 | Canola | nucleus | 34.27 | 37.61 |
| CDY71759 | Canola | nucleus | 34.27 | 37.44 |
| KRH44531 | Soybean | nucleus | 33.87 | 37.33 |
| Solyc06g068390.1.1 | Tomato | nucleus | 26.61 | 37.29 |
| KRH23633 | Soybean | nucleus | 33.87 | 36.84 |
| CDX67963 | Canola | nucleus | 33.47 | 36.73 |
| PGSC0003DMT400073330 | Potato | nucleus | 29.44 | 36.32 |
| KRH61695 | Soybean | nucleus | 40.32 | 35.59 |
| KRH47378 | Soybean | nucleus | 37.1 | 35.25 |
| KRH09666 | Soybean | nucleus | 36.69 | 34.21 |
| CDY60000 | Canola | nucleus, plastid | 20.16 | 33.33 |
| CDY58140 | Canola | nucleus, plastid | 20.16 | 33.33 |
| CDY11864 | Canola | nucleus, plastid | 20.16 | 33.33 |
| KRH15782 | Soybean | nucleus | 41.13 | 32.69 |
| KRH52363 | Soybean | nucleus | 38.31 | 32.42 |
| KRH05270 | Soybean | nucleus | 40.73 | 30.79 |
| GSMUA_Achr8P29430_001 | Banana | nucleus | 31.45 | 30.35 |
| GSMUA_Achr2P05140_001 | Banana | nucleus | 30.65 | 30.04 |
| GSMUA_Achr5P22810_001 | Banana | nucleus | 29.44 | 28.4 |
| GSMUA_Achr6P01990_001 | Banana | nucleus | 26.61 | 26.61 |
| CDY07483 | Canola | nucleus | 25.4 | 25.61 |
| CDY24418 | Canola | nucleus | 21.77 | 25.59 |
| CDY69498 | Canola | nucleus | 21.77 | 25.59 |
| TraesCS6D01G135200.1 | Wheat | nucleus | 17.74 | 25.43 |
| CDY03873 | Canola | nucleus | 21.77 | 25.35 |
| TraesCS6A01G145900.1 | Wheat | nucleus | 18.55 | 24.86 |
| Os02t0182300-00 | Rice | cytosol, mitochondrion, peroxisome | 19.35 | 24.74 |
| OQU84499 | Sorghum | nucleus | 19.35 | 24.62 |
| CDY65468 | Canola | nucleus | 25.81 | 24.43 |
| CDY72110 | Canola | nucleus | 20.97 | 24.41 |
| HORVU0Hr1G015760.1 | Barley | nucleus | 16.94 | 24.0 |
| CDY50321 | Canola | nucleus | 25.81 | 23.97 |
| TraesCS5D01G354900.1 | Wheat | nucleus | 20.16 | 22.52 |
| Zm00001d015525_P001 | Maize | nucleus | 14.92 | 21.14 |
| TraesCS5D01G355400.1 | Wheat | nucleus | 19.35 | 19.83 |
| TraesCS3B01G560300.1 | Wheat | nucleus | 19.76 | 19.29 |
| EES00097 | Sorghum | nucleus | 22.98 | 19.26 |
| CDY39248 | Canola | cytosol | 12.5 | 19.14 |
| TraesCS3D01G505300.1 | Wheat | nucleus | 19.76 | 18.99 |
| TraesCS3A01G497500.1 | Wheat | nucleus | 19.35 | 18.46 |
| Zm00001d050143_P001 | Maize | nucleus | 20.16 | 17.67 |
Protein Annotations
| EnsemblPlants:CDY05377 | EnsemblPlantsGene:GSBRNA2T00120258001 | Gene3D:3.30.160.60 | GO:A0A078EWK0 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF258 |
| PFscan:PS50157 | ProteinID:CDY05377 | ProteinID:CDY05377.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 |
| UniParc:UPI0004EB500F | MapMan:15.5.15 | : | : | : | : |
Description
BnaC02g40850D
Coordinates
chrLK031961:-:779714..780460
Molecular Weight (calculated)
27666.9 Da
IEP (calculated)
7.232
GRAVY (calculated)
-0.852
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTSRDKQLP SDTSCIASSS TAFPCQDSLN KSQEQGFKDE EADANDSSQE LNLIDCIDSQ SCNGSDTSTE QKIFSCNYCQ RTFYSSQALG GHQNAHKRER
101: TLAKRGQRMA ASASAFGHPY GFSPVPFHGQ YNNRSLGIQA HSMSHKLSSY NGFGDHYGHV NWSRQSLDQQ PAIGKLSSMD HFHHHHQHHM MMMDPSVISR
201: SKNNMARSSS NIGRILVGSQ PLEQWRGEGV LLSTNQDEQQ KLDLSLKL
101: TLAKRGQRMA ASASAFGHPY GFSPVPFHGQ YNNRSLGIQA HSMSHKLSSY NGFGDHYGHV NWSRQSLDQQ PAIGKLSSMD HFHHHHQHHM MMMDPSVISR
201: SKNNMARSSS NIGRILVGSQ PLEQWRGEGV LLSTNQDEQQ KLDLSLKL
001: MDASIVSSST AFPYQDSLNQ SIEDEERDVH NSSHELNLID CIDDTTSIVN ESTTSTEQKL FSCNYCQRTF YSSQALGGHQ NAHKRERTLA KRGQRMAASA
101: SAFGHPYGFS PLPFHGQYNN HRSLGIQAHS ISHKLSSYNG FGGHYGQINW SRLPFDQQPA IGKFPSMDNF HHHHHQMMMM APSVNSRSNN IDSPSNTGRV
201: LEGSPTLEQW HGDKGLLLST SHHEEQQKLD LSLKL
101: SAFGHPYGFS PLPFHGQYNN HRSLGIQAHS ISHKLSSYNG FGGHYGQINW SRLPFDQQPA IGKFPSMDNF HHHHHQMMMM APSVNSRSNN IDSPSNTGRV
201: LEGSPTLEQW HGDKGLLLST SHHEEQQKLD LSLKL
Arabidopsis Description
ZFP3ZFP3 zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q0WT56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.