CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70775
CDX76690
CDX78760
CDX80127
CDX86457
CDX93919
CDY08148
CDY16887
CDY38459
CDY41709
CDY44770
CDY53013
CDY53722
CDY56452
CDY58518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24625.1	CDX80127	AT2G47700.1	21798944
AT1G24625.1	CDY53013	AT2G47700.1	21798944
AT1G24625.1	CDX86457	AT3G27960.1	21798944
AT1G24625.1	CDY58518	AT3G27960.1	21798944
AT1G24625.1	CDY08148	AT3G49580.1	21798944
AT1G24625.1	CDX76690	AT3G63210.1	21798944
AT1G24625.1	CDX93919	AT3G63210.1	21798944
AT1G24625.1	CDY53722	AT3G63210.1	21798944
AT1G24625.1	CDY56452	AT3G63210.1	21798944
AT1G24625.1	CDY44770	AT5G08330.1	21798944
AT1G24625.1	CDX70775	AT5G17790.1	21798944
AT1G24625.1	CDX78760	AT5G17790.1	21798944
AT1G24625.1	CDY16887	AT5G17790.1	21798944
AT1G24625.1	CDY38459	AT5G17790.1	21798944
AT1G24625.1	CDY41709	AT5G22355.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010975.1-P	Field mustard	nucleus	97.63	97.63
CDY69498	Canola	nucleus	97.63	97.63
CDY72110	Canola	nucleus	88.15	87.32
AT1G24625.1	Thale cress	nucleus	86.26	87.08
CDY03873	Canola	nucleus	87.2	86.39
CDY07483	Canola	nucleus	39.81	34.15
CDY60000	Canola	nucleus, plastid	22.75	32.0
CDY65468	Canola	nucleus	39.34	31.68
CDY39248	Canola	cytosol	24.17	31.48
CDY58140	Canola	nucleus, plastid	22.27	31.33
CDY50321	Canola	nucleus	39.34	31.09
CDY11864	Canola	nucleus, plastid	21.33	30.0
CDX79357	Canola	nucleus	27.96	26.11
CDX67963	Canola	nucleus	27.49	25.66
CDY39947	Canola	nucleus	26.54	25.45
CDY66132	Canola	nucleus	27.49	25.44
CDY71759	Canola	nucleus	26.54	24.67
CDX87338	Canola	nucleus	25.59	24.11
CDX69795	Canola	nucleus	26.07	22.73
CDX97070	Canola	nucleus	25.59	22.31
CDY05474	Canola	nucleus	25.59	21.77
CDY05377	Canola	nucleus	25.59	21.77
CDX88160	Canola	nucleus	25.12	21.54
CDY19813	Canola	nucleus	23.7	19.68
CDX87097	Canola	plastid	9.48	14.39

Protein Annotations

EnsemblPlants:CDY24418	EnsemblPlantsGene:GSBRNA2T00026663001	Gene3D:3.30.160.60	GO:A0A078GIG2	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF239
PFscan:PS50157	ProteinID:CDY24418	ProteinID:CDY24418.1	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667
UniParc:UPI0004EC1906	UniProt:A0A078GIG2	MapMan:15.5.15	:	:	:

Description

BnaCnng04850DBnaCnng04850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIG2]

Coordinates

chrLK032158:+:439778..441093

Molecular Weight (calculated)

23638.5 Da

IEP (calculated)

7.159

GRAVY (calculated)

-0.722

Length

211 amino acids

Sequence
(BLAST)

001: MTESDDASRE LPAREGDTSL NQDLSKPESI ISVSLDLKLN DNFNDDQKGA KCQSNPRVFS CNYCRRKFYS SQALGGHQNA HKRERTMAKR AVHMGRMFGH
101: HHRPYTYTSS SLGMQAHSGL LHHTLSQPQP PPHLARFHHQ GYFGNTVPLF FDYDDGSDLF WPGSFRQVVE EAEAPVVVAV RESGLDLNSV AADGSVVDNN
201: NRSKPDLTLR L

Best Arabidopsis Sequence Match ( AT1G24625.1 )
(BLAST)

001: MTESDDASRE TPASRGGEAS SNQDLSKPES NHVSLDLKLN DTFNDDTKST KCEANPRVFS CNYCRRKFYS SQALGGHQNA HKRERTMAKR AMHMGRMFGH
101: HHRPYTYTSS SLGMQAHSGL LHHTLSQPQP LVSRFHHQGY FGNTVPLFFD YDDGGSDFFW PGSFRQVVEE AEAPVVVVAS TESGLDLNSV AANGGVDNNS
201: SKPDLTLRL

Arabidopsis Description

ZFP7Zinc finger protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q39266]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.