CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70438
CDX78461
CDX85250
CDX86386
CDX91181
CDY00652
CDY04058
CDY07744
CDY14473
CDY27967
CDY44405
CDY64943
CDY66704
CDY67456
CDY67814
CDY68306

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63210.1	CDY66704	AT2G31985.1	21798944
AT3G63210.1	CDY68306	AT2G31985.1	21798944
AT3G63210.1	CDY07744	AT2G38270.1	21798944
AT3G63210.1	CDY14473	AT2G38270.1	21798944
AT3G63210.1	CDY00652	AT3G08850.1	21798944
AT3G63210.1	CDY27967	AT3G08850.1	21798944
AT3G63210.1	CDY64943	AT3G08850.1	21798944
AT3G63210.1	CDY67456	AT3G08850.1	21798944
AT3G63210.1	CDX85250	AT3G29160.1	21798944
AT3G63210.1	CDX86386	AT3G29160.1	21798944
AT3G63210.1	CDY04058	AT3G29160.1	21798944
AT3G63210.1	CDY44405	AT3G29160.1	21798944
AT3G63210.1	CDX70438	AT5G11980.1	21798944
AT3G63210.1	CDX78461	AT5G11980.1	21798944
AT3G63210.1	CDX91181	AT5G11980.1	21798944
AT3G63210.1	CDY67814	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76690	Canola	plastid	61.92	63.25
CDY56452	Canola	plastid	61.09	61.86
CDY53722	Canola	extracellular, vacuole	90.38	59.02
AT3G63210.1	Thale cress	mitochondrion, plastid	53.97	49.05
GSMUA_Achr3P25470_001	Banana	mitochondrion	31.38	31.78
CDY24316	Canola	mitochondrion, plastid	28.87	31.65
GSMUA_Achr1P14130_001	Banana	mitochondrion	36.82	30.77
CDX92948	Canola	mitochondrion	33.47	30.3
CDX98213	Canola	mitochondrion	33.05	30.15
CDY34246	Canola	mitochondrion	32.64	29.77
CDY65610	Canola	mitochondrion, nucleus	31.8	28.36
GSMUA_Achr2P08850_001	Banana	plastid	33.89	27.18
Os03t0665200-01	Rice	nucleus	34.31	27.15
EER91113	Sorghum	mitochondrion	34.31	26.11
GSMUA_Achr8P20380_001	Banana	mitochondrion, nucleus	29.71	25.18
TraesCS4D01G016600.1	Wheat	mitochondrion	29.29	25.0
Zm00001d013595_P001	Maize	mitochondrion	33.05	24.53
GSMUA_Achr9P25720_001	Banana	nucleus	33.05	24.09
TraesCS4A01G295300.1	Wheat	plastid	29.71	23.75
CDX69754	Canola	nucleus, plastid	27.2	23.64
Zm00001d032937_P001	Maize	cytosol	27.62	23.4
GSMUA_Achr6P22030_001	Banana	cytosol	29.29	23.18
TraesCS4B01G018400.1	Wheat	plastid	28.03	22.04
CDX97112	Canola	nucleus, plastid	25.1	21.9
EER94230	Sorghum	cytosol, endoplasmic reticulum, nucleus	25.52	21.71
CDX85711	Canola	plastid	20.08	21.24
CDX83224	Canola	cytosol	28.87	21.17
GSMUA_Achr4P22610_001	Banana	nucleus	33.05	21.01
Os10t0422600-01	Rice	endoplasmic reticulum	29.71	20.58
CDY38508	Canola	cytosol	26.78	20.58
CDX76742	Canola	nucleus	25.52	20.33
CDY11512	Canola	nucleus	24.69	19.67
GSMUA_Achr4P21250_001	Banana	nucleus	28.45	18.53
CDX67936	Canola	nucleus, plastid	19.67	18.43
CDX79402	Canola	nucleus, plastid	18.83	16.19
HORVU4Hr1G002700.4	Barley	cytosol, golgi, mitochondrion	21.34	11.67
HORVU3Hr1G018540.1	Barley	extracellular	2.93	5.38

Protein Annotations

EnsemblPlants:CDX93919	EnsemblPlantsGene:GSBRNA2T00156739001	InterPro:IPR007650	InterPro:Zf-FLZ_dom	PANTHER:PTHR33059	PANTHER:PTHR33059:SF11
PFAM:PF04570	PFscan:PS51795	ProteinID:CDX93919	ProteinID:CDX93919.1	SEG:seg	UniParc:UPI0004EDEE83
MapMan:27.3.3	:	:	:	:	:

Description

BnaC04g20780D

Coordinates

chrLK031878:+:654989..656287

Molecular Weight (calculated)

26701.7 Da

IEP (calculated)

6.501

GRAVY (calculated)

-0.446

Length

239 amino acids

Sequence
(BLAST)

001: MAADELSSPP TPNTYYPSDF FTSPKFRFFA SKITPFDSIV SPTSILEAHP SIFSSINPKP TSYLEPAIPK PPKFHPPEAF GLADLVQNRD HSSKPVNKMV
101: LFGSKLRVLI PSADFGTKTG PTSQMRHPPG QLSPCLQTKV LTVSEIDQTE DYTCVISHGP NPTITHIFDN SVFVEEATPP CSLPLPQETK KTNTDFLSNC
201: YTCKKKLDQK QDIYIYRGEK GFCSSECRYQ EMLLDQIET

Best Arabidopsis Sequence Match ( AT3G63210.1 )
(BLAST)

001: MLRNKPRAAV TTKKQTSLLM ADQPPPPKPN TCHCSPSLFS SPKFRFFTSK MMMTPFDSDF SLVSPTSILE ANPSIFSSKN PKPVSYFEPT IPNPQRFHSP
101: DVFGLADLVK DGDSNRDHSR KPVNKMVLFG SKLRVQIPSS ADFGTKTGIR YPPCQLSPCV QTKVLAVSEI DQTEDYTRVI SHGPNPTITH IFDNSVFVEA
201: TPCSVPLPQP AMETKSTESF LSRCFTCKKN LDQKQDIYIY RGEKGFCSSE CRYQEMLLDQ MET

Arabidopsis Description

MARD1Protein MARD1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGS1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.