Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G016600.1 | Wheat | mitochondrion | 84.62 | 90.36 |
| TraesCS4B01G018400.1 | Wheat | plastid | 80.27 | 78.95 |
| Os03t0665200-01 | Rice | nucleus | 66.89 | 66.23 |
| EER91113 | Sorghum | mitochondrion | 61.54 | 58.6 |
| Zm00001d013595_P001 | Maize | mitochondrion | 60.54 | 56.21 |
| HORVU4Hr1G002700.4 | Barley | cytosol, golgi, mitochondrion | 57.19 | 39.13 |
| VIT_07s0151g00800.t01 | Wine grape | mitochondrion, nucleus | 34.78 | 35.49 |
| CDY24316 | Canola | mitochondrion, plastid | 25.08 | 34.4 |
| CDX92948 | Canola | mitochondrion | 29.43 | 33.33 |
| CDY65610 | Canola | mitochondrion, nucleus | 29.77 | 33.21 |
| Bra001873.1-P | Field mustard | mitochondrion | 29.1 | 32.95 |
| Bra023820.1-P | Field mustard | mitochondrion | 28.43 | 32.44 |
| AT3G22550.1 | Thale cress | mitochondrion | 28.76 | 32.21 |
| Bra039962.1-P | Field mustard | mitochondrion, nucleus | 28.76 | 32.09 |
| CDY34246 | Canola | mitochondrion | 27.76 | 31.68 |
| KRG91310 | Soybean | nucleus, plastid | 28.43 | 31.6 |
| KRH35505 | Soybean | nucleus, plastid | 28.09 | 31.58 |
| CDX98213 | Canola | mitochondrion | 27.42 | 31.3 |
| Solyc09g082210.2.1 | Tomato | cytosol, plastid | 30.77 | 31.29 |
| KRH27651 | Soybean | plastid | 27.09 | 31.27 |
| Solyc09g065390.1.1 | Tomato | mitochondrion | 19.06 | 30.98 |
| VIT_05s0020g03670.t01 | Wine grape | nucleus, plastid | 30.1 | 30.82 |
| PGSC0003DMT400082082 | Potato | nucleus, plastid | 30.77 | 30.46 |
| KRH71405 | Soybean | mitochondrion, nucleus | 26.76 | 30.42 |
| CDX93919 | Canola | nucleus | 23.75 | 29.71 |
| Bra007736.1-P | Field mustard | plastid | 23.08 | 29.61 |
| AT3G63210.1 | Thale cress | mitochondrion, plastid | 25.75 | 29.28 |
| KRH32034 | Soybean | mitochondrion | 26.42 | 29.26 |
| KRH77839 | Soybean | plastid | 25.42 | 29.12 |
| CDX76690 | Canola | plastid | 22.74 | 29.06 |
| CDY56452 | Canola | plastid | 22.41 | 28.39 |
| GSMUA_Achr4P22610_001 | Banana | nucleus | 35.45 | 28.19 |
| KRH67235 | Soybean | mitochondrion, nucleus | 25.75 | 27.21 |
| KRG95554 | Soybean | mitochondrion, nucleus | 24.75 | 26.15 |
| GSMUA_Achr4P21250_001 | Banana | nucleus | 30.43 | 24.8 |
| TraesCS3A01G212800.1 | Wheat | nucleus | 22.07 | 24.26 |
| TraesCS3A01G117700.1 | Wheat | cytosol | 27.76 | 23.51 |
| TraesCS3A01G289000.1 | Wheat | cytosol | 20.4 | 22.51 |
| CDY53722 | Canola | extracellular, vacuole | 24.75 | 20.22 |
| CDX67936 | Canola | nucleus, plastid | 17.06 | 20.0 |
| AT1G79970.1 | Thale cress | nucleus, plastid | 15.72 | 19.58 |
| Bra003541.1-P | Field mustard | nucleus, plastid | 17.39 | 18.7 |
| Bra040437.1-P | Field mustard | mitochondrion, plastid | 24.75 | 18.55 |
| CDX79402 | Canola | nucleus, plastid | 16.39 | 17.63 |
| TraesCS1A01G119800.1 | Wheat | plastid | 22.41 | 16.96 |
| PGSC0003DMT400037957 | Potato | plastid | 14.38 | 14.68 |
| Solyc06g009000.1.1 | Tomato | plastid | 14.05 | 14.58 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G295300.1 | EnsemblPlantsGene:TraesCS4A01G295300 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 | PANTHER:PTHR33059:SF65 |
| PFAM:PF04570 | PFscan:PS51795 | SEG:seg | MapMan:27.3.3 | : | : |
Description
No Description!
Coordinates
chr4A:+:596159177..596161899
Molecular Weight (calculated)
31342.4 Da
IEP (calculated)
7.954
GRAVY (calculated)
-0.197
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGHGLPLPA PQVLRPSEAM LRNRSRRAVG AGGGGGGLMP QPEPLAGATA QSSSSPRPYM ALPQAGFLDG AEQGPSSSMS PTSILETKQF CCSALPPFLS
101: ERSLRKAQME TAALGPEPAG AGGLADVLRE HGNAKAGGRK VVFGSQLRIQ VPSGRAAELV SSPIEFGVKN RDAVLSPARR FLPEVVSSPT ARVFAAGVAP
201: GEMAMSEDYT CVISRGPNPR TRHIFDDCIV ESCGDVLVDN GPGTAAVPAS GFLSSCHACR RQLAGHANDT FIHRGGKAFC SDECRYREML FDEAVDNLR
101: ERSLRKAQME TAALGPEPAG AGGLADVLRE HGNAKAGGRK VVFGSQLRIQ VPSGRAAELV SSPIEFGVKN RDAVLSPARR FLPEVVSSPT ARVFAAGVAP
201: GEMAMSEDYT CVISRGPNPR TRHIFDDCIV ESCGDVLVDN GPGTAAVPAS GFLSSCHACR RQLAGHANDT FIHRGGKAFC SDECRYREML FDEAVDNLR
001: MLKKRSRSKQ ALMAETNQSQ NQKQSKTTPF PRLFTAFSSF KSFTENDAVA SPTSILDTKP FSVLKNPFGS DNPKTQEPET RLKLEPKRIG LAIVDSLIQD
101: ETPEPGPRSG TILFGSQLRI RVPDSPISSS DFGIKTRNSQ PETKKPGSES GLGSPRIISG YFPASDMELS EDYTCVTCHG PNPRTIHIFD NCIVESQPGV
201: VFFRSSDPVN ESDSDYSPPD SFLSCCCNCK KSLGPRDDIF MYRGDRAFCS SECRSIEMMM SEENDTK
101: ETPEPGPRSG TILFGSQLRI RVPDSPISSS DFGIKTRNSQ PETKKPGSES GLGSPRIISG YFPASDMELS EDYTCVTCHG PNPRTIHIFD NCIVESQPGV
201: VFFRSSDPVN ESDSDYSPPD SFLSCCCNCK KSLGPRDDIF MYRGDRAFCS SECRSIEMMM SEENDTK
Arabidopsis Description
NAD(P)H-quinone oxidoreductase subunit, putative (DUF581) [Source:UniProtKB/TrEMBL;Acc:Q8L471]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.