Factsheet for PGSC0003DMT400037957

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g009000.1.1	Tomato	plastid	59.73	60.76
GSMUA_Achr3P25470_001	Banana	mitochondrion	20.14	25.0
PGSC0003DMT400082082	Potato	nucleus, plastid	22.53	21.85
GSMUA_Achr8P20380_001	Banana	mitochondrion, nucleus	20.48	21.28
GSMUA_Achr1P14130_001	Banana	mitochondrion	19.45	19.93
GSMUA_Achr9P25720_001	Banana	nucleus	21.16	18.9
GSMUA_Achr2P08850_001	Banana	plastid	19.11	18.79
Os03t0665200-01	Rice	nucleus	17.41	16.89
CDX67936	Canola	nucleus, plastid	14.68	16.86
EER91113	Sorghum	mitochondrion	16.72	15.61
Zm00001d032937_P001	Maize	cytosol	15.02	15.6
Zm00001d013595_P001	Maize	mitochondrion	17.06	15.53
CDX79402	Canola	nucleus, plastid	14.68	15.47
Bra003541.1-P	Field mustard	nucleus, plastid	14.68	15.47
TraesCS4D01G016600.1	Wheat	mitochondrion	14.68	15.36
GSMUA_Achr6P22030_001	Banana	cytosol	15.7	15.23
AT1G79970.1	Thale cress	nucleus, plastid	11.95	14.58
TraesCS4B01G018400.1	Wheat	plastid	15.02	14.47
TraesCS4A01G295300.1	Wheat	plastid	14.68	14.38
GSMUA_Achr4P22610_001	Banana	nucleus	18.43	14.36
GSMUA_Achr4P21250_001	Banana	nucleus	17.75	14.17
PGSC0003DMT400037607	Potato	nucleus	17.75	13.23
EER94230	Sorghum	cytosol, endoplasmic reticulum, nucleus	12.63	13.17
Os10t0422600-01	Rice	endoplasmic reticulum	14.68	12.46
HORVU4Hr1G002700.4	Barley	cytosol, golgi, mitochondrion	14.68	9.84
HORVU3Hr1G018540.1	Barley	extracellular	2.05	4.62

Protein Annotations

EnsemblPlants:PGSC0003DMT400037957	EnsemblPlantsGene:PGSC0003DMG400014642	EntrezGene:102582218	PANTHER:PTHR33059	PANTHER:PTHR33059:SF15	PGSC:PGSC0003DMG400014642
RefSeq:XP_006355797.1	RefSeq:XP_015168019.1	SEG:seg	UniParc:UPI0002957172	UniProt:M1B657	MapMan:35.2

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400014642]

Coordinates

chr6:+:571177..573828

Molecular Weight (calculated)

32630.3 Da

IEP (calculated)

8.277

GRAVY (calculated)

-0.822

Length

293 amino acids

Sequence
(BLAST)

001: MADQSSNYPS HNSTQNHTNK PISSFLGSPR IFNGLLTRSL SDIGTIQTSR DRRYDNEIVT SPNSLLDGMQ NLNIGNPFGY DRKSPNPINK KLPIIKTTPN
101: NMPRFQTSQD RLYDAECIVS SNSTLDGMQN DNLGNPFGYD RKPPNPFTKK PPNNKLESEI TSTSQFQTSQ NGNLFGYDRK PPNPITKKHS NNKMESESIG
201: LALIDPKVTS EKFHVLFGAK LKVEIPCSIE VKNSTCGDLD EMESSEDYTC VITHGPNPKT THIFDNCIIE SSCGVRKLRE NSCKVDHTKG KGI

Best Arabidopsis Sequence Match ( AT3G22550.1 )
(BLAST)

001: MLKKRSRSKQ ALMAETNQSQ NQKQSKTTPF PRLFTAFSSF KSFTENDAVA SPTSILDTKP FSVLKNPFGS DNPKTQEPET RLKLEPKRIG LAIVDSLIQD
101: ETPEPGPRSG TILFGSQLRI RVPDSPISSS DFGIKTRNSQ PETKKPGSES GLGSPRIISG YFPASDMELS EDYTCVTCHG PNPRTIHIFD NCIVESQPGV
201: VFFRSSDPVN ESDSDYSPPD SFLSCCCNCK KSLGPRDDIF MYRGDRAFCS SECRSIEMMM SEENDTK

Arabidopsis Description

NAD(P)H-quinone oxidoreductase subunit, putative (DUF581) [Source:UniProtKB/TrEMBL;Acc:Q8L471]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.