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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • nucleus 4
  • plastid 2
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX67936 Canola nucleus, plastid 76.62 83.53
AT1G79970.1 Thale cress nucleus, plastid 35.25 40.83
VIT_05s0020g03670.t01 Wine grape nucleus, plastid 24.46 23.29
KRG91310 Soybean nucleus, plastid 22.3 23.05
KRH35505 Soybean nucleus, plastid 21.58 22.56
GSMUA_Achr3P25470_001 Banana mitochondrion 19.06 22.46
KRH27651 Soybean plastid 20.14 21.62
GSMUA_Achr1P14130_001 Banana mitochondrion 21.94 21.33
GSMUA_Achr8P20380_001 Banana mitochondrion, nucleus 21.22 20.92
Bra000551.1-P Field mustard cytosol, mitochondrion 19.06 20.78
Bra007780.1-P Field mustard nucleus 21.94 20.61
KRH77839 Soybean plastid 19.06 20.31
Bra039962.1-P Field mustard mitochondrion, nucleus 19.42 20.15
Bra001873.1-P Field mustard mitochondrion 19.06 20.08
Bra008960.1-P Field mustard nucleus, plastid 19.78 20.0
Os03t0665200-01 Rice nucleus 21.58 19.87
GSMUA_Achr2P08850_001 Banana plastid 21.22 19.8
Bra023820.1-P Field mustard mitochondrion 18.35 19.47
Bra007736.1-P Field mustard plastid 16.19 19.31
TraesCS4D01G016600.1 Wheat mitochondrion 18.7 18.57
GSMUA_Achr6P22030_001 Banana cytosol 20.14 18.54
Zm00001d032937_P001 Maize cytosol 18.7 18.44
GSMUA_Achr9P25720_001 Banana nucleus 21.58 18.29
Bra023326.1-P Field mustard plastid 14.75 17.98
Zm00001d013595_P001 Maize mitochondrion 20.5 17.7
EER91113 Sorghum mitochondrion 19.78 17.52
TraesCS4A01G295300.1 Wheat plastid 18.7 17.39
TraesCS4B01G018400.1 Wheat plastid 18.7 17.11
EER94230 Sorghum cytosol, endoplasmic reticulum, nucleus 17.27 17.08
Solyc06g009000.1.1 Tomato plastid 15.47 14.93
PGSC0003DMT400037957 Potato plastid 15.47 14.68
GSMUA_Achr4P22610_001 Banana nucleus 19.78 14.63
Os10t0422600-01 Rice endoplasmic reticulum 17.27 13.91
GSMUA_Achr4P21250_001 Banana nucleus 17.99 13.62
Bra040437.1-P Field mustard mitochondrion, plastid 16.91 11.78
HORVU4Hr1G002700.4 Barley cytosol, golgi, mitochondrion 17.63 11.21
HORVU3Hr1G018540.1 Barley extracellular 4.68 10.0
Protein Annotations
EnsemblPlants:Bra003541.1EnsemblPlants:Bra003541.1-PEnsemblPlantsGene:Bra003541PANTHER:PTHR33059PANTHER:PTHR33059:SF15SEG:seg
UniParc:UPI00025419CCUniProt:M4CH58MapMan:35.2:::
Description
AT1G79970 (E=1e-024) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: senescence-associated protein-related (TAIR:AT2G25690.2); Has 74 Blast hits to 74 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Coordinates
chrA07:+:13699487..13700405
Molecular Weight (calculated)
30253.7 Da
IEP (calculated)
4.278
GRAVY (calculated)
-0.573
Length
278 amino acids
Sequence
(BLAST)
001: MAEADPDSSD TSDLKPISSS APLFSIPRFF VAKESDAAGR SPTSPLDFTI FGGLFSPRSY PAAPSSPRFR NRWACDKVGL SLLSSSVGEE EGHEEGLFNI
101: VLAPQIKPRL FGSCVKSYSL PKNYAAPSMS SDAVNIEEEL NIHDSEEHNS PRRSSSSPMD IISSQAYSRS LSAREMALSE DYTCIISHGP NPKTTHIFGD
201: CILDCDPNEL GTKDETEKPE GDDDSFLCLC TDKPQNHIHM HSETAAAEEK ESDKGGEEDC LEISPGTSYN EDLFPMAS
Best Arabidopsis Sequence Match ( AT1G79970.1 )
(BLAST)
001: MGEASDSDSS DESLKHNSTP PLFSISGFFC VAKGGDSDPG RSPTSPLDFG VFGGLFSPRS SSSSPLHRNK WLSHKVGLSL LSSSFELGDD PFRRDYIVLA
101: PQVKVNNVNT ATPKLSSDPC VIVEEPRRSS SSSPMDIIST YSRSLSGREM ALSEDYTCII SHGPNPKTTY IFGDCILDCD PKDLGKEDIE IHEEGDDSFS
201: TEKPQNHREV SAEKESENAG AEESCYEEED LFPMAMPLNP
Arabidopsis Description
At1g79970/F19K16.7 [Source:UniProtKB/TrEMBL;Acc:Q9CA98]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.