Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P25470_001 | Banana | mitochondrion | 28.48 | 36.44 |
| GSMUA_Achr2P08850_001 | Banana | plastid | 32.78 | 33.22 |
| KRG91310 | Soybean | nucleus, plastid | 29.14 | 32.71 |
| GSMUA_Achr8P20380_001 | Banana | mitochondrion, nucleus | 30.46 | 32.62 |
| VIT_05s0020g03670.t01 | Wine grape | nucleus, plastid | 31.46 | 32.53 |
| VIT_07s0151g00800.t01 | Wine grape | mitochondrion, nucleus | 30.79 | 31.74 |
| CDY34246 | Canola | mitochondrion | 27.48 | 31.68 |
| Solyc09g065390.1.1 | Tomato | mitochondrion | 19.21 | 31.52 |
| GSMUA_Achr1P14130_001 | Banana | mitochondrion | 29.8 | 31.47 |
| Solyc09g082210.2.1 | Tomato | cytosol, plastid | 30.46 | 31.29 |
| KRH35505 | Soybean | nucleus, plastid | 27.15 | 30.83 |
| Bra023820.1-P | Field mustard | mitochondrion | 26.49 | 30.53 |
| PGSC0003DMT400082082 | Potato | nucleus, plastid | 30.46 | 30.46 |
| AT3G22550.1 | Thale cress | mitochondrion | 26.49 | 29.96 |
| CDX98213 | Canola | mitochondrion | 25.83 | 29.77 |
| CDY24316 | Canola | mitochondrion, plastid | 21.19 | 29.36 |
| CDX93919 | Canola | nucleus | 23.18 | 29.29 |
| Bra007736.1-P | Field mustard | plastid | 22.52 | 29.18 |
| CDY65610 | Canola | mitochondrion, nucleus | 25.83 | 29.1 |
| CDX76690 | Canola | plastid | 22.52 | 29.06 |
| KRH27651 | Soybean | plastid | 24.83 | 28.96 |
| CDX92948 | Canola | mitochondrion | 25.17 | 28.79 |
| Bra039962.1-P | Field mustard | mitochondrion, nucleus | 25.5 | 28.73 |
| Bra001873.1-P | Field mustard | mitochondrion | 24.83 | 28.41 |
| GSMUA_Achr9P25720_001 | Banana | nucleus | 30.46 | 28.05 |
| CDY56452 | Canola | plastid | 21.85 | 27.97 |
| KRG95554 | Soybean | mitochondrion, nucleus | 26.16 | 27.92 |
| KRH32034 | Soybean | mitochondrion | 24.83 | 27.78 |
| KRH71405 | Soybean | mitochondrion, nucleus | 24.17 | 27.76 |
| KRH67235 | Soybean | mitochondrion, nucleus | 25.83 | 27.56 |
| KRH77839 | Soybean | plastid | 23.51 | 27.2 |
| AT3G63210.1 | Thale cress | mitochondrion, plastid | 23.18 | 26.62 |
| GSMUA_Achr4P21250_001 | Banana | nucleus | 30.79 | 25.34 |
| GSMUA_Achr4P22610_001 | Banana | nucleus | 29.8 | 23.94 |
| CDX67936 | Canola | nucleus, plastid | 18.54 | 21.96 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.17 | 21.71 |
| GSMUA_Achr7P13270_001 | Banana | nucleus | 25.83 | 21.37 |
| AT1G79970.1 | Thale cress | nucleus, plastid | 16.56 | 20.83 |
| Bra003541.1-P | Field mustard | nucleus, plastid | 18.54 | 20.14 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion | 21.85 | 19.82 |
| CDX79402 | Canola | nucleus, plastid | 18.21 | 19.78 |
| CDY53722 | Canola | extracellular, vacuole | 23.84 | 19.67 |
| GSMUA_Achr7P09810_001 | Banana | mitochondrion | 24.83 | 18.07 |
| Bra040437.1-P | Field mustard | mitochondrion, plastid | 23.84 | 18.05 |
| PGSC0003DMT400037957 | Potato | plastid | 15.23 | 15.7 |
| Solyc06g009000.1.1 | Tomato | plastid | 13.91 | 14.58 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P22030_001 | EnsemblPlants:GSMUA_Achr6T22030_001 | EnsemblPlantsGene:GSMUA_Achr6G22030_001 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 |
| PANTHER:PTHR33059:SF26 | PFAM:PF04570 | PFscan:PS51795 | UniParc:UPI000295FA45 | UniProt:M0T951 | MapMan:27.3.3 |
Description
Putative Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G22030_001]
Coordinates
chr6:-:18762533..18764552
Molecular Weight (calculated)
32833.1 Da
IEP (calculated)
6.690
GRAVY (calculated)
-0.354
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLRSKIQDI ILRERSKAVS RKKELMPDTT SSPPPNPAFT SPNLLVEGCS VRKSSMYSED AIGPKSMLAT IPFFATGNRS SSDSRDCKTK PLSVETAAAT
101: TGTESRHHPW HNRSSRAIGL GLVDALSNEE TGDVGCTMVV FGCQLKIQTL PGLSNSMSPV SIESPRSIME FGSKTKTSQM DSYLPGRTVS GSVFSPQLFM
201: GHMSPTEIEL SEDYTCVISH GPIPKKTHIF HDCIIESCDR EFLTLKKSTC MDDPSGYAAD TSLSCCVSCK EDIGKGKGIS LYRGEKGLCS HECGYQEVVS
301: DE
101: TGTESRHHPW HNRSSRAIGL GLVDALSNEE TGDVGCTMVV FGCQLKIQTL PGLSNSMSPV SIESPRSIME FGSKTKTSQM DSYLPGRTVS GSVFSPQLFM
201: GHMSPTEIEL SEDYTCVISH GPIPKKTHIF HDCIIESCDR EFLTLKKSTC MDDPSGYAAD TSLSCCVSCK EDIGKGKGIS LYRGEKGLCS HECGYQEVVS
301: DE
001: MLKKRSRSKQ ALMAETNQSQ NQKQSKTTPF PRLFTAFSSF KSFTENDAVA SPTSILDTKP FSVLKNPFGS DNPKTQEPET RLKLEPKRIG LAIVDSLIQD
101: ETPEPGPRSG TILFGSQLRI RVPDSPISSS DFGIKTRNSQ PETKKPGSES GLGSPRIISG YFPASDMELS EDYTCVTCHG PNPRTIHIFD NCIVESQPGV
201: VFFRSSDPVN ESDSDYSPPD SFLSCCCNCK KSLGPRDDIF MYRGDRAFCS SECRSIEMMM SEENDTK
101: ETPEPGPRSG TILFGSQLRI RVPDSPISSS DFGIKTRNSQ PETKKPGSES GLGSPRIISG YFPASDMELS EDYTCVTCHG PNPRTIHIFD NCIVESQPGV
201: VFFRSSDPVN ESDSDYSPPD SFLSCCCNCK KSLGPRDDIF MYRGDRAFCS SECRSIEMMM SEENDTK
Arabidopsis Description
NAD(P)H-quinone oxidoreductase subunit, putative (DUF581) [Source:UniProtKB/TrEMBL;Acc:Q8L471]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.