Factsheet for GSMUA_AchrUn_randomP12080_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P14130_001
GSMUA_Achr2P08850_001
GSMUA_Achr3P25470_001
GSMUA_Achr4P21250_001
GSMUA_Achr4P22610_001
GSMUA_Achr6P22030_001
GSMUA_Achr8P20380_001
GSMUA_Achr9P25720_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08850.1	GSMUA_Achr1P14130_001	AT3G22550.1	21798944
AT3G08850.1	GSMUA_Achr2P08850_001	AT3G22550.1	21798944
AT3G08850.1	GSMUA_Achr3P25470_001	AT3G22550.1	21798944
AT3G08850.1	GSMUA_Achr4P21250_001	AT3G22550.1	21798944
AT3G08850.1	GSMUA_Achr4P22610_001	AT3G22550.1	21798944
AT3G08850.1	GSMUA_Achr6P22030_001	AT3G22550.1	21798944
AT3G08850.1	GSMUA_Achr8P20380_001	AT3G22550.1	21798944
AT3G08850.1	GSMUA_Achr9P25720_001	AT3G22550.1	21798944
AT3G08850.1	GSMUA_Achr1P14130_001	AT3G63210.1	21798944
AT3G08850.1	GSMUA_Achr2P08850_001	AT3G63210.1	21798944
AT3G08850.1	GSMUA_Achr3P25470_001	AT3G63210.1	21798944
AT3G08850.1	GSMUA_Achr4P21250_001	AT3G63210.1	21798944
AT3G08850.1	GSMUA_Achr4P22610_001	AT3G63210.1	21798944
AT3G08850.1	GSMUA_Achr6P22030_001	AT3G63210.1	21798944
AT3G08850.1	GSMUA_Achr8P20380_001	AT3G63210.1	21798944
AT3G08850.1	GSMUA_Achr9P25720_001	AT3G63210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88726	Soybean	extracellular	15.64	43.42
GSMUA_Achr5P14390_001	Banana	cytosol	63.98	9.69
Zm00001d005063_P001	Maize	cytosol, plastid	43.6	7.74
CDY64943	Canola	cytosol	41.71	7.34
Solyc09g014780.2.1	Tomato	nucleus	46.45	7.24
TraesCS5A01G149200.2	Wheat	plastid	45.5	7.03
TraesCS5B01G147900.4	Wheat	plastid	45.02	6.96
TraesCS5D01G143600.3	Wheat	plastid	45.02	6.96
PGSC0003DMT400043895	Potato	cytosol	43.6	6.83
EES16504	Sorghum	plastid	44.08	6.8
Bra029726.1-P	Field mustard	cytosol	43.13	6.76
OQU82706	Sorghum	cytosol, plastid	43.13	6.75
AT3G08850.1	Thale cress	cytosol	42.65	6.7
Os12t0110000-01	Rice	cytosol, plastid	43.13	6.7
CDY27967	Canola	cytosol	43.6	6.67
CDY67456	Canola	plastid	42.18	6.55
CDY00652	Canola	plastid	42.18	6.55
Bra001342.1-P	Field mustard	plastid	42.18	6.55
AT5G01770.1	Thale cress	cytosol	40.76	6.44
Zm00001d052327_P006	Maize	cytosol	41.23	6.27
Zm00001d023230_P006	Maize	cytosol, plastid	30.33	4.71
GSMUA_AchrUn_...	Banana	cytosol	12.32	2.12
Os11t0109933-01	Rice	cytosol	11.85	2.05
VIT_08s0058g00910.t01	Wine grape	cytosol, extracellular, nucleus	0.47	1.32

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP12080_001	EnsemblPlants:GSMUA_AchrUn_randomT12080_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG12080_001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0031929	GO:GO:0031931
InterPro:Raptor	InterPro:Raptor_N	PANTHER:PTHR12848	PFAM:PF14538	SEG:seg	UniParc:UPI0002967E66
UniProt:M0U8G7	MapMan:35.1	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG12080_001]

Coordinates

chrchrUn_random:-:57788474..57794205

Molecular Weight (calculated)

22107.6 Da

IEP (calculated)

6.255

GRAVY (calculated)

0.001

Length

211 amino acids

Sequence
(BLAST)

001: MALGDLMASG LSGSSASVSN HLDEFSGRED GDGATAAEGS EPEVATPAGG ILAVRASAAA TSMVYLPHTV VLSDFRHEGF EDCAAVGPSD NGLVSKWRPK
101: DRLKTGCVAL VLCLNIGVDP PDVIKISPCA RMECWIGDLR LLPLFPYSPY AISLDALYSN VAKRTGVRRT KEGGGGGGSI PEKRLAMCCG GPQWVPRVEM
201: EKRACKVTVG L

Best Arabidopsis Sequence Match ( AT3G08850.1 )
(BLAST)

0001: MALGDLMVSR FSQSSVSLVS NHRYDEDCVS SHDDGDSRRK DSEAKSSSSY GNGTTEGAAT ATSMAYLPQT IVLCELRHDA SEASAPLGTS EIVLVPKWRL
0101: KERMKTGCVA LVLCLNITVD PPDVIKISPC ARIEAWIDPF SMAPPKALET IGKNLSTQYE RWQPRARYKV QLDPTVDEVR KLCLTCRKYA KTERVLFHYN
0201: GHGVPKPTAN GEIWVFNKSY TQYIPLPISE LDSWLKTPSI YVFDCSAARM ILNAFAELHD WGSSGSSGSS RDCILLAACD VHETLPQSVE FPADVFTSCL
0301: TTPIKMALKW FCRRSLLKEI IDESLIDRIP GRQNDRKTLL GELNWIFTAV TDTIAWNVLP HELFQRLFRQ DLLVASLFRN FLLAERIMRS ANCNPISHPM
0401: LPPTHQHHMW DAWDMAAEIC LSQLPQLVLD PSTEFQPSPF FTEQLTAFEV WLDHGSEHKK PPEQLPIVLQ VLLSQCHRFR ALVLLGRFLD MGSWAVDLAL
0501: SVGIFPYVLK LLQTTTNELR QILVFIWTKI LALDKSCQID LVKDGGHTYF IRFLDSSGAF PEQRAMAAFV LAVIVDGHRR GQEACLEANL IGVCLGHLEA
0601: SRPSDPQPEP LFLQWLCLCL GKLWEDFMEA QIMGREANAF EKLAPLLSEP QPEVRAAAVF ALGTLLDIGF DSNKSVVEDE FDDDEKIRAE DAIIKSLLDV
0701: VSDGSPLVRA EVAVALARFA FGHKQHLKLA AASYWKPQSS SLLTSLPSIA KFHDPGSATI VSLHMSPLTR ASTDSQPVAR ESRISSSPLG SSGLMQGSPL
0801: SDDSSLHSDS GMMHDSVSNG AVHQPRLLDN AVYSQCVRAM FALAKDPSPR IASLGRRVLS IIGIEQVVAK PSKPTGRPGE AATTSHTPLA GLARSSSWFD
0901: MHAGNLPLSF RTPPVSPPRT NYLSGLRRVC SLEFRPHLLG SPDSGLADPL LGASGSERSL LPLSTIYGWS CGHFSKPLLG GADASQEIAA KREEKEKFAL
1001: EHIAKCQHSS ISKLNNNPIA NWDTRFETGT KTALLHPFSP IVVAADENER IRVWNYEEAT LLNGFDNHDF PDKGISKLCL INELDDSLLL VASCDGSVRI
1101: WKNYATKGKQ KLVTGFSSIQ GHKPGARDLN AVVDWQQQSG YLYASGETST VTLWDLEKEQ LVRSVPSESE CGVTALSASQ VHGGQLAAGF ADGSLRLYDV
1201: RSPEPLVCAT RPHQKVERVV GLSFQPGLDP AKVVSASQAG DIQFLDLRTT RDTYLTIDAH RGSLTALAVH RHAPIIASGS AKQLIKVFSL QGEQLGIIRY
1301: YPSFMAQKIG SVSCLTFHPY QVLLAAGAAD SFVSIYTHDN SQAR

Arabidopsis Description

RAPTOR1RAPTOR1B [Source:UniProtKB/TrEMBL;Acc:A0A178V9S6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.