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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • mitochondrion 1
  • cytosol 2
  • nucleus 2
PPI

Inferred distinct locusB in Crop

locusBlocations
EER91113
EER94230
OQU77194
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d023230_P006 Maize cytosol, plastid 90.13 90.73
OQU82706 Sorghum cytosol, plastid 88.74 89.99
Os11t0109933-01 Rice cytosol 77.85 87.44
TraesCS5D01G143600.3 Wheat plastid 85.89 86.14
TraesCS5B01G147900.4 Wheat plastid 85.82 86.07
TraesCS5A01G149200.2 Wheat plastid 85.6 85.79
Os12t0110000-01 Rice cytosol, plastid 84.8 85.36
GSMUA_AchrUn_... Banana cytosol 66.96 74.65
GSMUA_Achr5P14390_001 Banana cytosol 71.86 70.57
Solyc09g014780.2.1 Tomato nucleus 67.47 68.22
PGSC0003DMT400043895 Potato cytosol 66.96 68.0
AT3G08850.1 Thale cress cytosol 64.99 66.15
CDY00652 Canola plastid 64.62 65.1
CDY67456 Canola plastid 64.47 64.95
Bra001342.1-P Field mustard plastid 64.47 64.95
Bra029726.1-P Field mustard cytosol 63.45 64.49
CDY27967 Canola cytosol 63.67 63.12
AT5G01770.1 Thale cress cytosol 61.26 62.72
CDY64943 Canola cytosol 53.73 61.3
KRG88726 Soybean extracellular 2.56 46.05
GSMUA_AchrUn_... Banana cytosol 6.8 44.08
VIT_08s0058g00910.t01 Wine grape cytosol, extracellular, nucleus 2.34 42.11
Protein Annotations
Gene3D:1.25.10.10Gene3D:2.130.10.10MapMan:27.7.1.2EntrezGene:8070335InterPro:ARM-likeInterPro:ARM-type_fold
UniProt:C5YQ66ncoils:CoilEnsemblPlants:EES16504ProteinID:EES16504ProteinID:EES16504.1GO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0006464GO:GO:0006950GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152
GO:GO:0008361GO:GO:0009056GO:GO:0009267GO:GO:0009605GO:GO:0009719GO:GO:0009987
GO:GO:0009991GO:GO:0010506GO:GO:0016043GO:GO:0016049GO:GO:0019538GO:GO:0030307
GO:GO:0030674GO:GO:0031929GO:GO:0031931GO:GO:0040007GO:GO:0071230GO:GO:0071902
InterPro:IPR001680InterPro:IPR011989InterPro:IPR015943InterPro:IPR017986PFAM:PF00400PFAM:PF14538
PRINTS:PR01547PFscan:PS50294PANTHER:PTHR12848PANTHER:PTHR12848:SF16InterPro:RaptorInterPro:Raptor_N
SMART:SM00320SMART:SM01302EnsemblPlantsGene:SORBI_3008G009700SUPFAM:SSF48371SUPFAM:SSF50978UniParc:UPI0001A8835D
InterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeatInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfRefSeq:XP_002442666.1SEG:seg
Description
hypothetical protein
Coordinates
chr8:-:776200..788469
Molecular Weight (calculated)
150205.0 Da
IEP (calculated)
6.606
GRAVY (calculated)
-0.155
Length
1368 amino acids
Sequence
(BLAST)
0001: MALGDLMASR LVHSSSSSPS PSPLRSTAAA AAPAPAPPLP NHHHHNHNQN HNHAGDGLLA ANGPEPRNGV EAAAEVEKPA PVAYLPQVVV LCEQRHEPEG
0101: IDEAAAAAAA PSTSGLVSKW RPKDRMKTGC VALVLCLNIS VDPPDVIKIS PCARTECWID PFSMAPPKAL DTIGKTLHSQ YERWQPKARY KLQLDPTVEE
0201: VKKLCNTCRK YARSERVLFH YNGHGVPKPT SNGEIWVFNK SYTQYIPLPI TDLESWLKTP SIYVFDCSAA GIIVKAFLER LDWSSSSSSS AQKDCILLAA
0301: CEAHQSLPQS EEFPADVFTA CLTTPIKMAL HWFCKRSLLR GSLDLSLIDQ IPGRQNDRKT LLGELNWIFT AITDTIAWNV LPHDLFQRLF RQDLLVASLF
0401: RNFLLAERIM RSASCSPVSY PLLPPTHQHH MWDAWDMAAE ICLSKLPELI ADPNVEFQPS PFFTEQLTAF EVWLDHGSED KKPPEQLPIV LQVLLSQSHR
0501: FRALVLLGRF LDMGPWAVDL ALSVGIFPYV LKLLQTSAME LRQILVFIWT KILSLDKSCQ VDLVKDGGHA YFVRFLDSLD AYPEQRAMAA FVLAVIVDGH
0601: RTGQEACMNA GLIDVCLRHL QPENPHDSHT EPLLLQWLCL CLGKLWEDFP DVQLLSLQTN TPEIVICLLS GPQPEVRAAA VFALGTLLDT TSNGADDDSD
0701: DDEKVKAEIN IVRSLLQISS DASPLVRSEV AIALTRFALG HNKHLKSVAA EYWKPQSNSL LKSLPSLANI SNPSNVYSPN NILQGSIGPV LRVGSDSSAA
0801: GRDGRISTSS PIATSSIMHG SPQSDDSSQH SDSGILLREN ASNGGLGYTR SRPVDNVIYS QFISTMCSFA KDPYPRIATI GRRALSLIGV EQVVMKNTRF
0901: NSGGAHRGET SASNFGMARS SSWLDMNSGS NLIKFRTPPV SPPQHDYLPG LRRVCSMEFG QHPINSPDGL ADPLLSSAAA PSNAELSILP QSTIYNWSCG
1001: HFSRPLLTGS DDNEEANARR EERERVALDY IAKCQRSSCK MTSQIASWDT RFELGTKAAL LLPFSPIVVA ADENEQIRVW NYDDALPVNS YQNHNLSDRG
1101: LSKLLLINEL DESLLLAASS DGNVRVWKNF AQKGGQKLVT AFSSVQGHRA AGRSIVIDWQ QQSGYLYASG DMSSIFVWDL DKEQLLSTIQ SSGDSAISSL
1201: TASQVCSGHF AAGFADGSVR IYDVRSTDRV VYMARPHSPR TEKVVGIGFQ PVFDPYKIVS ASQAGDIQFL DVRRAAEPYL TIEAHRGSLT ALAVHRHAPV
1301: VASGSAKQMI KVFSLEGEQL TIIRYQPSFM GQRIGSVNCL SFHPYKSLLA AGAGDNALVS IYAEENYK
Best Arabidopsis Sequence Match ( AT3G08850.1 )
(BLAST)
0001: MALGDLMVSR FSQSSVSLVS NHRYDEDCVS SHDDGDSRRK DSEAKSSSSY GNGTTEGAAT ATSMAYLPQT IVLCELRHDA SEASAPLGTS EIVLVPKWRL
0101: KERMKTGCVA LVLCLNITVD PPDVIKISPC ARIEAWIDPF SMAPPKALET IGKNLSTQYE RWQPRARYKV QLDPTVDEVR KLCLTCRKYA KTERVLFHYN
0201: GHGVPKPTAN GEIWVFNKSY TQYIPLPISE LDSWLKTPSI YVFDCSAARM ILNAFAELHD WGSSGSSGSS RDCILLAACD VHETLPQSVE FPADVFTSCL
0301: TTPIKMALKW FCRRSLLKEI IDESLIDRIP GRQNDRKTLL GELNWIFTAV TDTIAWNVLP HELFQRLFRQ DLLVASLFRN FLLAERIMRS ANCNPISHPM
0401: LPPTHQHHMW DAWDMAAEIC LSQLPQLVLD PSTEFQPSPF FTEQLTAFEV WLDHGSEHKK PPEQLPIVLQ VLLSQCHRFR ALVLLGRFLD MGSWAVDLAL
0501: SVGIFPYVLK LLQTTTNELR QILVFIWTKI LALDKSCQID LVKDGGHTYF IRFLDSSGAF PEQRAMAAFV LAVIVDGHRR GQEACLEANL IGVCLGHLEA
0601: SRPSDPQPEP LFLQWLCLCL GKLWEDFMEA QIMGREANAF EKLAPLLSEP QPEVRAAAVF ALGTLLDIGF DSNKSVVEDE FDDDEKIRAE DAIIKSLLDV
0701: VSDGSPLVRA EVAVALARFA FGHKQHLKLA AASYWKPQSS SLLTSLPSIA KFHDPGSATI VSLHMSPLTR ASTDSQPVAR ESRISSSPLG SSGLMQGSPL
0801: SDDSSLHSDS GMMHDSVSNG AVHQPRLLDN AVYSQCVRAM FALAKDPSPR IASLGRRVLS IIGIEQVVAK PSKPTGRPGE AATTSHTPLA GLARSSSWFD
0901: MHAGNLPLSF RTPPVSPPRT NYLSGLRRVC SLEFRPHLLG SPDSGLADPL LGASGSERSL LPLSTIYGWS CGHFSKPLLG GADASQEIAA KREEKEKFAL
1001: EHIAKCQHSS ISKLNNNPIA NWDTRFETGT KTALLHPFSP IVVAADENER IRVWNYEEAT LLNGFDNHDF PDKGISKLCL INELDDSLLL VASCDGSVRI
1101: WKNYATKGKQ KLVTGFSSIQ GHKPGARDLN AVVDWQQQSG YLYASGETST VTLWDLEKEQ LVRSVPSESE CGVTALSASQ VHGGQLAAGF ADGSLRLYDV
1201: RSPEPLVCAT RPHQKVERVV GLSFQPGLDP AKVVSASQAG DIQFLDLRTT RDTYLTIDAH RGSLTALAVH RHAPIIASGS AKQLIKVFSL QGEQLGIIRY
1301: YPSFMAQKIG SVSCLTFHPY QVLLAAGAAD SFVSIYTHDN SQAR
Arabidopsis Description
RAPTOR1RAPTOR1B [Source:UniProtKB/TrEMBL;Acc:A0A178V9S6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.