Factsheet for Bra029726.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001873.1-P
Bra007736.1-P
Bra010044.1-P
Bra023820.1-P
Bra029297.1-P
Bra034302.1-P
Bra039962.1-P
Bra040437.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08850.1	Bra034302.1-P	AT2G26290.1	21798944
AT3G08850.1	Bra001873.1-P	AT3G22550.1	21798944
AT3G08850.1	Bra023820.1-P	AT3G22550.1	21798944
AT3G08850.1	Bra039962.1-P	AT3G22550.1	21798944
AT3G08850.1	Bra007736.1-P	AT3G63210.1	21798944
AT3G08850.1	Bra040437.1-P	AT3G63210.1	21798944
AT3G08850.1	Bra010044.1-P	AT5G61960.1	15720729
AT3G08850.1	Bra029297.1-P	AT5G61960.1	15720729

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64943	Canola	cytosol	86.26	96.83
AT3G08850.1	Thale cress	cytosol	90.42	90.55
Bra001342.1-P	Field mustard	plastid	88.56	87.78
VIT_08s0058g00890.t01	Wine grape	cytosol	74.0	73.07
KRH40797	Soybean	nucleus	73.63	72.18
PGSC0003DMT400043895	Potato	cytosol	72.14	72.09
Solyc09g014780.2.1	Tomato	nucleus	72.36	71.99
KRH00387	Soybean	nucleus	72.96	71.94
GSMUA_AchrUn_...	Banana	cytosol	64.78	71.07
Os11t0109933-01	Rice	cytosol	60.62	67.0
GSMUA_Achr5P14390_001	Banana	cytosol	68.65	66.33
Os12t0110000-01	Rice	cytosol, plastid	65.68	65.05
TraesCS5D01G143600.3	Wheat	plastid	65.82	64.96
TraesCS5A01G149200.2	Wheat	plastid	65.82	64.91
TraesCS5B01G147900.4	Wheat	plastid	65.75	64.88
OQU82706	Sorghum	cytosol, plastid	64.26	64.12
EES16504	Sorghum	plastid	64.49	63.45
KRH40804	Soybean	cytosol	6.32	62.04
Zm00001d005064_P002	Maize	plastid	9.51	51.41
GSMUA_AchrUn_...	Banana	cytosol	6.76	43.13

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.130.10.10	MapMan:27.7.1.2	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra029726
EnsemblPlants:Bra029726.1	EnsemblPlants:Bra029726.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
GO:GO:0031929	GO:GO:0031931	InterPro:IPR001680	InterPro:IPR011989	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4ELQ7	PFAM:PF14538	PRINTS:PR01547	PFscan:PS50294	PANTHER:PTHR12848	PANTHER:PTHR12848:SF16
InterPro:Raptor	InterPro:Raptor_N	SMART:SM00320	SMART:SM01302	SUPFAM:SSF48371	SUPFAM:SSF50978
UniParc:UPI0002547CEF	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

AT3G08850 (E=0.0) RAPTOR1B, ATRAPTOR1B, RAPTOR1 | RAPTOR1; nucleotide binding / protein binding

Coordinates

chrA05:+:22497126..22504195

Molecular Weight (calculated)

148608.0 Da

IEP (calculated)

6.593

GRAVY (calculated)

-0.136

Length

1346 amino acids

Sequence
(BLAST)

0001: MALGDLMVSR FSQSSVSLAS NHRYNEDDDD CVSSSAPGDS SVPSRTKDSE ATTSSIYGNG TEERDATATA TSMAYLPQTI VLREVRHNAS EVSAPLGTSD
0101: GIALAPKWRL KERMKTGCVA LVLCLNITVD PPDVIKISPC ARIEAWIDPF SMAPPKALEA IGKNLSTQYE RWQPRARYKV QLDPTLDEVR KLCLTCRKYA
0201: KTERVLFHYN GHGVPKPTAN GEIWVFNKHY TQYIPLPISE LDSWLKTPSI YVFDCSAARM ILNAFAELHD WGSSGSSGSS RDCILLAACD VHETLPQSVE
0301: FPADVFTACL TTPIKMALKW FCRRSLLKEI IDESLIDMIP GRQNDRKTLL GELNWIFTAV TDTIAWNVLP HELFQRLFRQ DLLVASLFRN FLLAERIMRS
0401: ANCNPISHPM LPPTHQHHMW DAWDMAAEIC LSRLPQLVRD PNTEFEPSPF FTDQLTAFEV WLDHGSELKK PPEQLPIVLQ VLLSQCHRYR ALVLLGRFLD
0501: MGSWAVDQAL SVGIFPYVLK LLQTTTNELR QILVFIWTKI LALDKSCQID LVKDGGHTYF IRFLDSLDAI PDQRAMAAFV LSVILDGLRR GQEACLEANL
0601: IGVCLGHLEL SRPNDSQQEK FLQWLCLCLG KLWEDFTEAQ IMGREANAFK KLAPLLSEPQ PEVRAAAVFA LGTLLDIGFG SSKSSLEDEF DDDEKIRAEE
0701: AIIKNLLDVV SDGSPLVRSE VAVALARFAF GHKKHLKLAA ASYWKPQSSS LLTSLPSIAK LHEAGNATIV SLHMSPLTRA STESQPVARE ARISSSPLSS
0801: SGLMHGSPLS DDGIMHDSVS NGAVHQQRLF DNAVYSQCVR SMFALAKDPS PRIASLGRRV LSIIGIEQVV AKPSKTIGRL GEAATTSNTP LAGLSRSSSW
0901: FDMHAGNMPL SFRTPPVSPP RTNYLPGLRR VCSLEFRPHL TGSPDSGLAD SFLGASGSER SFLPLSTIYN WSCGHFSKPL LSEADDSQEI DTKREEKEKF
1001: ALEHIAKCQH SSISKLNNNP IANWDTRFET GTKTALLHPF TPIVVAADEN ERIRVWNYEE GTLLNGFDNH DFPDKGISKL CLVNELDDSL LLVASCDGSV
1101: RIWKNYATKG KQKLVTGFSS IQGHKPGARD LNAVVDWQQQ SGCLYASGEV STVSLWDLDK EQLVRSIPSE SECGVTALSA SQVHGSQLVA GFADGSLRLY
1201: DVRSPEPLVL ATRPHQKVER VVGLSFQPGL DPSKVVSASQ AGDIQFLDLR TSRDTYLTID AHRGSLTALA VHRHAPIIAS GSAKQLIKVF SLEGEQLGRI
1301: LYYPSFMGQK IGSVSCLAFH PYQVLLAAGA VDSLVSVYTH DNSPAR

Best Arabidopsis Sequence Match ( AT3G08850.1 )
(BLAST)

0001: MALGDLMVSR FSQSSVSLVS NHRYDEDCVS SHDDGDSRRK DSEAKSSSSY GNGTTEGAAT ATSMAYLPQT IVLCELRHDA SEASAPLGTS EIVLVPKWRL
0101: KERMKTGCVA LVLCLNITVD PPDVIKISPC ARIEAWIDPF SMAPPKALET IGKNLSTQYE RWQPRARYKV QLDPTVDEVR KLCLTCRKYA KTERVLFHYN
0201: GHGVPKPTAN GEIWVFNKSY TQYIPLPISE LDSWLKTPSI YVFDCSAARM ILNAFAELHD WGSSGSSGSS RDCILLAACD VHETLPQSVE FPADVFTSCL
0301: TTPIKMALKW FCRRSLLKEI IDESLIDRIP GRQNDRKTLL GELNWIFTAV TDTIAWNVLP HELFQRLFRQ DLLVASLFRN FLLAERIMRS ANCNPISHPM
0401: LPPTHQHHMW DAWDMAAEIC LSQLPQLVLD PSTEFQPSPF FTEQLTAFEV WLDHGSEHKK PPEQLPIVLQ VLLSQCHRFR ALVLLGRFLD MGSWAVDLAL
0501: SVGIFPYVLK LLQTTTNELR QILVFIWTKI LALDKSCQID LVKDGGHTYF IRFLDSSGAF PEQRAMAAFV LAVIVDGHRR GQEACLEANL IGVCLGHLEA
0601: SRPSDPQPEP LFLQWLCLCL GKLWEDFMEA QIMGREANAF EKLAPLLSEP QPEVRAAAVF ALGTLLDIGF DSNKSVVEDE FDDDEKIRAE DAIIKSLLDV
0701: VSDGSPLVRA EVAVALARFA FGHKQHLKLA AASYWKPQSS SLLTSLPSIA KFHDPGSATI VSLHMSPLTR ASTDSQPVAR ESRISSSPLG SSGLMQGSPL
0801: SDDSSLHSDS GMMHDSVSNG AVHQPRLLDN AVYSQCVRAM FALAKDPSPR IASLGRRVLS IIGIEQVVAK PSKPTGRPGE AATTSHTPLA GLARSSSWFD
0901: MHAGNLPLSF RTPPVSPPRT NYLSGLRRVC SLEFRPHLLG SPDSGLADPL LGASGSERSL LPLSTIYGWS CGHFSKPLLG GADASQEIAA KREEKEKFAL
1001: EHIAKCQHSS ISKLNNNPIA NWDTRFETGT KTALLHPFSP IVVAADENER IRVWNYEEAT LLNGFDNHDF PDKGISKLCL INELDDSLLL VASCDGSVRI
1101: WKNYATKGKQ KLVTGFSSIQ GHKPGARDLN AVVDWQQQSG YLYASGETST VTLWDLEKEQ LVRSVPSESE CGVTALSASQ VHGGQLAAGF ADGSLRLYDV
1201: RSPEPLVCAT RPHQKVERVV GLSFQPGLDP AKVVSASQAG DIQFLDLRTT RDTYLTIDAH RGSLTALAVH RHAPIIASGS AKQLIKVFSL QGEQLGIIRY
1301: YPSFMAQKIG SVSCLTFHPY QVLLAAGAAD SFVSIYTHDN SQAR

Arabidopsis Description

RAPTOR1RAPTOR1B [Source:UniProtKB/TrEMBL;Acc:A0A178V9S6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.