CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05309
KRH15727
KRH41056
KRH52268
KRH54096
KRH59735
KRH61599
KRH63864

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08850.1	KRH05309	AT2G26290.1	21798944
AT3G08850.1	KRH15727	AT2G26290.1	21798944
AT3G08850.1	KRH52268	AT2G26290.1	21798944
AT3G08850.1	KRH61599	AT2G26290.1	21798944
AT3G08850.1	KRH41056	AT5G61960.1	15720729
AT3G08850.1	KRH54096	AT5G61960.1	15720729
AT3G08850.1	KRH59735	AT5G61960.1	15720729
AT3G08850.1	KRH63864	AT5G61960.1	15720729

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00387	Soybean	nucleus	95.34	95.9
VIT_08s0058g00890.t01	Wine grape	cytosol	82.01	82.61
Solyc09g014780.2.1	Tomato	nucleus	79.68	80.86
PGSC0003DMT400043895	Potato	cytosol	79.24	80.77
AT3G08850.1	Thale cress	cytosol	74.51	76.12
KRH40804	Soybean	cytosol	7.43	74.45
Bra001342.1-P	Field mustard	plastid	72.98	73.78
CDY67456	Canola	plastid	72.98	73.78
CDY00652	Canola	plastid	72.91	73.71
Bra029726.1-P	Field mustard	cytosol	72.18	73.63
CDY27967	Canola	cytosol	72.32	71.96
AT5G01770.1	Thale cress	cytosol	69.48	71.41
CDY64943	Canola	cytosol	61.84	70.81
Zm00001d005064_P002	Maize	plastid	9.47	52.21
KRG88726	Soybean	extracellular	2.77	50.0
KRH65947	Soybean	cytosol	8.52	47.76

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100777178	Gene3D:2.130.10.10	MapMan:27.7.1.2	EMBL:ACUP02006059	InterPro:ARM-like
InterPro:ARM-type_fold	EnsemblPlantsGene:GLYMA_09G278500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0008361	GO:GO:0009056	GO:GO:0009267
GO:GO:0009605	GO:GO:0009719	GO:GO:0009987	GO:GO:0009991	GO:GO:0010506	GO:GO:0016043
GO:GO:0016049	GO:GO:0019538	GO:GO:0030307	GO:GO:0030674	GO:GO:0031929	GO:GO:0031931
GO:GO:0040007	GO:GO:0071230	GO:GO:0071902	UniProt:I1L744	InterPro:IPR001680	InterPro:IPR011989
InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH40797	ProteinID:KRH40797	ProteinID:KRH40797.1	PFAM:PF00400
PFAM:PF14538	PRINTS:PR01547	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR12848	PANTHER:PTHR12848:SF16
InterPro:Raptor	InterPro:Raptor_N	SMART:SM00320	SMART:SM01302	SUPFAM:SSF48371	SUPFAM:SSF50978
UniParc:UPI0002338D14	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:49383654..49396748

Molecular Weight (calculated)

150481.0 Da

IEP (calculated)

6.521

GRAVY (calculated)

-0.104

Length

1373 amino acids

Sequence
(BLAST)

0001: MALGDLMASR FSQSTVLVVP TSHNHLDDST TASSSSSAAA AVAALNNNSS SNDDADFAHR RDSEAAIAII SSGNYAGNAA TSMAYLPHTV VLCELRHDAF
0101: EAAVPAGPSD SGLVSKWRPK DRMKTGCVAL VLCLNISVDP PDVIKISPCA RMECWIDPFS MAPQKALESI GKTLSSQYER WQPKARYKCQ LDPTVDEVKK
0201: LCTTCRKYAK SERVLFHYNG HGVPKPTANG EIWVFNKSYT QYIPLPINEL DSWLKTPSIY VFDCSAAGMI VNSFIELHEW SASNSSVSQR DCILLAACEA
0301: HETLPQSAEF PADVFTSCLT TPIKMALRWF CTRSLLRESL DYSLIDKIPG RPNDRKTLLG ELNWIFTAVT DTIAWNVLPH DLFQRLFRQD LLVASLFRNF
0401: LLAERIMRSA NCSPVSHPML PPTHQHHMWD AWDMAAELCL SQLPSLVEDP NAEFQPSTFF TEQLTAFEVW LDHGSEHKKP PEQLPIVLQV LLSQCHRFRA
0501: LVLLGRFLDM GPWAVDLALS VGIFPYVLKL LQTTTPELRQ ILVFIWTKIL ALDKSCQVDL VKDGGHIYFI KFLDSMEAYP EQRAMAAFVL AVIVDGHRRG
0601: QEACIEAGLI HVCLKHLQSS CPNDSQTEPL FLQWLCLCLG KLWEDFSEAQ TIGLQEDATT IFAPLLSEPQ PEVRASAVFA LGTLLDVGFD SCRSVGGDEE
0701: CDDDDKFRAE VSIVKSMLDV ASDGSPLVRA EVAVALARFA FGHNKHLKSI AAAYWKPQAN SLINSLPSLT NIKGSVGGYA KQNQHMPHGS IVSPQIGPIR
0801: VGNDNSPVVR DGRVSSSSPL AGSGIMHGSP LSDDSSHHSD SGILNDGFSN GVANHTGPKP FDNALYSQCV LAMCTLAKDP SPRIANLGRR VLSIIGIEQV
0901: VAKPLKSSGV RTAESTASPL ARSSSWFDMN GGHLPLTFRT PPVSPPRPSY ITRMRRVCSL EFRPHLMDSP DSGLADPLLG SGGASGTSDR SFLPQSTIYS
1001: WSCGHFSKPL LTAADDSEEV SARREEREKF ALEHIAKCQH SAVSRLTNPI AKWDIKGTQT ALLQPFSPIV IAADENERIR IWNHEEATLL NSFDNHDFPD
1101: KGISKLCLVN ELDESLLLAA SSDGNIRIWK DYTLRGKQKL VTAFSSIHGH KPGVRNLNAV VDWQQQCGYL YASGEISSIM LWDVDKEQLV NSKSSSSDCS
1201: VSALAASQVH GGQFTAGFID GSVRLYDVRT PDMLVCGLRP HTQRVEKVVG IGFQPGLDQG KIVSASQAGD IQFLDIRNHS SAYLTIEAHR GSLTALAVHR
1301: HAPIIASGSA KQLIKVFSLE GDQLGTIRYY PTLMAQKIGS VSCLNFHPYQ VLLAAGAADA CVCIYADDNT QAR

Best Arabidopsis Sequence Match ( AT3G08850.1 )
(BLAST)

0001: MALGDLMVSR FSQSSVSLVS NHRYDEDCVS SHDDGDSRRK DSEAKSSSSY GNGTTEGAAT ATSMAYLPQT IVLCELRHDA SEASAPLGTS EIVLVPKWRL
0101: KERMKTGCVA LVLCLNITVD PPDVIKISPC ARIEAWIDPF SMAPPKALET IGKNLSTQYE RWQPRARYKV QLDPTVDEVR KLCLTCRKYA KTERVLFHYN
0201: GHGVPKPTAN GEIWVFNKSY TQYIPLPISE LDSWLKTPSI YVFDCSAARM ILNAFAELHD WGSSGSSGSS RDCILLAACD VHETLPQSVE FPADVFTSCL
0301: TTPIKMALKW FCRRSLLKEI IDESLIDRIP GRQNDRKTLL GELNWIFTAV TDTIAWNVLP HELFQRLFRQ DLLVASLFRN FLLAERIMRS ANCNPISHPM
0401: LPPTHQHHMW DAWDMAAEIC LSQLPQLVLD PSTEFQPSPF FTEQLTAFEV WLDHGSEHKK PPEQLPIVLQ VLLSQCHRFR ALVLLGRFLD MGSWAVDLAL
0501: SVGIFPYVLK LLQTTTNELR QILVFIWTKI LALDKSCQID LVKDGGHTYF IRFLDSSGAF PEQRAMAAFV LAVIVDGHRR GQEACLEANL IGVCLGHLEA
0601: SRPSDPQPEP LFLQWLCLCL GKLWEDFMEA QIMGREANAF EKLAPLLSEP QPEVRAAAVF ALGTLLDIGF DSNKSVVEDE FDDDEKIRAE DAIIKSLLDV
0701: VSDGSPLVRA EVAVALARFA FGHKQHLKLA AASYWKPQSS SLLTSLPSIA KFHDPGSATI VSLHMSPLTR ASTDSQPVAR ESRISSSPLG SSGLMQGSPL
0801: SDDSSLHSDS GMMHDSVSNG AVHQPRLLDN AVYSQCVRAM FALAKDPSPR IASLGRRVLS IIGIEQVVAK PSKPTGRPGE AATTSHTPLA GLARSSSWFD
0901: MHAGNLPLSF RTPPVSPPRT NYLSGLRRVC SLEFRPHLLG SPDSGLADPL LGASGSERSL LPLSTIYGWS CGHFSKPLLG GADASQEIAA KREEKEKFAL
1001: EHIAKCQHSS ISKLNNNPIA NWDTRFETGT KTALLHPFSP IVVAADENER IRVWNYEEAT LLNGFDNHDF PDKGISKLCL INELDDSLLL VASCDGSVRI
1101: WKNYATKGKQ KLVTGFSSIQ GHKPGARDLN AVVDWQQQSG YLYASGETST VTLWDLEKEQ LVRSVPSESE CGVTALSASQ VHGGQLAAGF ADGSLRLYDV
1201: RSPEPLVCAT RPHQKVERVV GLSFQPGLDP AKVVSASQAG DIQFLDLRTT RDTYLTIDAH RGSLTALAVH RHAPIIASGS AKQLIKVFSL QGEQLGIIRY
1301: YPSFMAQKIG SVSCLTFHPY QVLLAAGAAD SFVSIYTHDN SQAR

Arabidopsis Description

RAPTOR1RAPTOR1B [Source:UniProtKB/TrEMBL;Acc:A0A178V9S6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.