CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05309
KRH15727
KRH41056
KRH52268
KRH54096
KRH59735
KRH61599
KRH63864

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08850.1	KRH05309	AT2G26290.1	21798944
AT3G08850.1	KRH15727	AT2G26290.1	21798944
AT3G08850.1	KRH52268	AT2G26290.1	21798944
AT3G08850.1	KRH61599	AT2G26290.1	21798944
AT3G08850.1	KRH41056	AT5G61960.1	15720729
AT3G08850.1	KRH54096	AT5G61960.1	15720729
AT3G08850.1	KRH59735	AT5G61960.1	15720729
AT3G08850.1	KRH63864	AT5G61960.1	15720729

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005064_P002	Maize	plastid	51.09	28.11
KRH40797	Soybean	nucleus	74.45	7.43
KRH00387	Soybean	nucleus	72.99	7.33
CDY64943	Canola	cytosol	60.58	6.92
VIT_08s0058g00890.t01	Wine grape	cytosol	65.69	6.6
PGSC0003DMT400043895	Potato	cytosol	64.23	6.53
Solyc09g014780.2.1	Tomato	nucleus	64.23	6.5
AT3G08850.1	Thale cress	cytosol	63.5	6.47
Bra001342.1-P	Field mustard	plastid	62.77	6.33
CDY00652	Canola	plastid	62.77	6.33
CDY67456	Canola	plastid	62.77	6.33
Bra029726.1-P	Field mustard	cytosol	62.04	6.32
CDY27967	Canola	cytosol	61.31	6.09
AT5G01770.1	Thale cress	cytosol	58.39	5.99
KRH65947	Soybean	cytosol	10.22	5.71
KRG88726	Soybean	extracellular	0.73	1.32

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A0R0IN98	EMBL:ACUP02006060	EnsemblPlantsGene:GLYMA_09G278700	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0031929	GO:GO:0031931	InterPro:IPR001680
InterPro:IPR015943	EnsemblPlants:KRH40804	ProteinID:KRH40804	ProteinID:KRH40804.1	PFAM:PF00400	PANTHER:PTHR12848
PANTHER:PTHR12848:SF16	InterPro:Raptor	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0006EDEBFC	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:49410279..49411948

Molecular Weight (calculated)

15141.6 Da

IEP (calculated)

9.391

GRAVY (calculated)

0.395

Length

137 amino acids

Sequence
(BLAST)

001: MIYEFDSKWK TQLCHIVIFL QIVSAAQTRD IQFLDIRNHS SAYLTIYGHR GSLTALAVHR HAPIIASGSA KQIIKVFSLE GDLLGTVRYY PTLMPQKIGS
101: VSCLNFHPYQ ALLAAGAADA SVIYAGKQFL IIIMSSL

Best Arabidopsis Sequence Match ( AT3G08850.1 )
(BLAST)

0001: MALGDLMVSR FSQSSVSLVS NHRYDEDCVS SHDDGDSRRK DSEAKSSSSY GNGTTEGAAT ATSMAYLPQT IVLCELRHDA SEASAPLGTS EIVLVPKWRL
0101: KERMKTGCVA LVLCLNITVD PPDVIKISPC ARIEAWIDPF SMAPPKALET IGKNLSTQYE RWQPRARYKV QLDPTVDEVR KLCLTCRKYA KTERVLFHYN
0201: GHGVPKPTAN GEIWVFNKSY TQYIPLPISE LDSWLKTPSI YVFDCSAARM ILNAFAELHD WGSSGSSGSS RDCILLAACD VHETLPQSVE FPADVFTSCL
0301: TTPIKMALKW FCRRSLLKEI IDESLIDRIP GRQNDRKTLL GELNWIFTAV TDTIAWNVLP HELFQRLFRQ DLLVASLFRN FLLAERIMRS ANCNPISHPM
0401: LPPTHQHHMW DAWDMAAEIC LSQLPQLVLD PSTEFQPSPF FTEQLTAFEV WLDHGSEHKK PPEQLPIVLQ VLLSQCHRFR ALVLLGRFLD MGSWAVDLAL
0501: SVGIFPYVLK LLQTTTNELR QILVFIWTKI LALDKSCQID LVKDGGHTYF IRFLDSSGAF PEQRAMAAFV LAVIVDGHRR GQEACLEANL IGVCLGHLEA
0601: SRPSDPQPEP LFLQWLCLCL GKLWEDFMEA QIMGREANAF EKLAPLLSEP QPEVRAAAVF ALGTLLDIGF DSNKSVVEDE FDDDEKIRAE DAIIKSLLDV
0701: VSDGSPLVRA EVAVALARFA FGHKQHLKLA AASYWKPQSS SLLTSLPSIA KFHDPGSATI VSLHMSPLTR ASTDSQPVAR ESRISSSPLG SSGLMQGSPL
0801: SDDSSLHSDS GMMHDSVSNG AVHQPRLLDN AVYSQCVRAM FALAKDPSPR IASLGRRVLS IIGIEQVVAK PSKPTGRPGE AATTSHTPLA GLARSSSWFD
0901: MHAGNLPLSF RTPPVSPPRT NYLSGLRRVC SLEFRPHLLG SPDSGLADPL LGASGSERSL LPLSTIYGWS CGHFSKPLLG GADASQEIAA KREEKEKFAL
1001: EHIAKCQHSS ISKLNNNPIA NWDTRFETGT KTALLHPFSP IVVAADENER IRVWNYEEAT LLNGFDNHDF PDKGISKLCL INELDDSLLL VASCDGSVRI
1101: WKNYATKGKQ KLVTGFSSIQ GHKPGARDLN AVVDWQQQSG YLYASGETST VTLWDLEKEQ LVRSVPSESE CGVTALSASQ VHGGQLAAGF ADGSLRLYDV
1201: RSPEPLVCAT RPHQKVERVV GLSFQPGLDP AKVVSASQAG DIQFLDLRTT RDTYLTIDAH RGSLTALAVH RHAPIIASGS AKQLIKVFSL QGEQLGIIRY
1301: YPSFMAQKIG SVSCLTFHPY QVLLAAGAAD SFVSIYTHDN SQAR

Arabidopsis Description

RAPTOR1RAPTOR1B [Source:UniProtKB/TrEMBL;Acc:A0A178V9S6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.