Factsheet for Zm00001d005064_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

plastid: 17710559

gfp PMID: 17710559 doi

LF Primavesi, H Wu, EA Mudd, A Day, HD Jones

Rothamsted Research, Harpenden, Hertfordshire, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013595_P001
Zm00001d032937_P001
Zm00001d035763_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08850.1	Zm00001d013595_P001	AT3G22550.1	21798944
AT3G08850.1	Zm00001d032937_P001	AT3G22550.1	21798944
AT3G08850.1	Zm00001d013595_P001	AT3G63210.1	21798944
AT3G08850.1	Zm00001d032937_P001	AT3G63210.1	21798944
AT3G08850.1	Zm00001d035763_P003	AT5G61960.1	15720729

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40804	Soybean	cytosol	28.11	51.09
VIT_08s0058g00900.t01	Wine grape	vacuole	30.12	44.38
Zm00001d023230_P006	Maize	cytosol, plastid	65.06	11.92
Zm00001d052327_P006	Maize	cytosol	65.86	11.82
CDY64943	Canola	cytosol	49.8	10.34
AT3G08850.1	Thale cress	cytosol	52.61	9.75
AT5G01770.1	Thale cress	cytosol	52.21	9.73
KRH00387	Soybean	nucleus	52.61	9.6
Bra029726.1-P	Field mustard	cytosol	51.41	9.51
CDY67456	Canola	plastid	51.81	9.5
CDY00652	Canola	plastid	51.81	9.5
Bra001342.1-P	Field mustard	plastid	51.81	9.5
KRH40797	Soybean	nucleus	52.21	9.47
VIT_08s0058g00890.t01	Wine grape	cytosol	51.81	9.46
Solyc09g014780.2.1	Tomato	nucleus	51.41	9.46
PGSC0003DMT400043895	Potato	cytosol	51.0	9.43
CDY27967	Canola	cytosol	51.0	9.2
Zm00001d005063_P001	Maize	cytosol, plastid	10.44	2.19

Protein Annotations

Gene3D:2.130.10.10	Gene3D:3.30.450.20	MapMan:35.1	UniProt:A0A1D6EJ16	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	GO:GO:0031929	GO:GO:0031931	InterPro:IPR000014	InterPro:IPR001680
InterPro:IPR015943	ProteinID:ONM20088.1	ProteinID:ONM20089.1	InterPro:PAS	InterPro:PAS-like_dom_sf	PFAM:PF00400
PFAM:PF13426	PFscan:PS50112	PANTHER:PTHR12848	PANTHER:PTHR12848:SF16	InterPro:Raptor	SMART:SM00320
SUPFAM:SSF50978	SUPFAM:SSF55785	UniParc:UPI00084398A5	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf
EnsemblPlantsGene:Zm00001d005064	EnsemblPlants:Zm00001d005064_P002	EnsemblPlants:Zm00001d005064_T002	SEG:seg	:	:

Description

Regulatory-associated protein of TOR 1

Coordinates

chr2:+:156933960..156947069

Molecular Weight (calculated)

26820.5 Da

IEP (calculated)

4.629

GRAVY (calculated)

-0.184

Length

249 amino acids

Sequence
(BLAST)

001: MEWDSESDGA GSVGVDEQEE EQEEERGGEG GGVDAGGMFT LAIEGMLRAS GPCGLVVTNA LEPDCPIIYA NRGFEEATGY RVEEFLGRNC NELRLSTSQV
101: RSGHFAAGFA DGSVRIYDVR SPDRFVYVAR PHAPRTEKIV SASQAGDIQF LDVRRAAEPY LTIEAHRGSL TALVVHRYAP VVASGSAKQM IKVFSLGGEQ
201: LTIIGYLPSF MGQRIGSVNC LSFHPYKSLL AAGAGDNALV SIYAEENYK

Best Arabidopsis Sequence Match ( AT3G08850.1 )
(BLAST)

0001: MALGDLMVSR FSQSSVSLVS NHRYDEDCVS SHDDGDSRRK DSEAKSSSSY GNGTTEGAAT ATSMAYLPQT IVLCELRHDA SEASAPLGTS EIVLVPKWRL
0101: KERMKTGCVA LVLCLNITVD PPDVIKISPC ARIEAWIDPF SMAPPKALET IGKNLSTQYE RWQPRARYKV QLDPTVDEVR KLCLTCRKYA KTERVLFHYN
0201: GHGVPKPTAN GEIWVFNKSY TQYIPLPISE LDSWLKTPSI YVFDCSAARM ILNAFAELHD WGSSGSSGSS RDCILLAACD VHETLPQSVE FPADVFTSCL
0301: TTPIKMALKW FCRRSLLKEI IDESLIDRIP GRQNDRKTLL GELNWIFTAV TDTIAWNVLP HELFQRLFRQ DLLVASLFRN FLLAERIMRS ANCNPISHPM
0401: LPPTHQHHMW DAWDMAAEIC LSQLPQLVLD PSTEFQPSPF FTEQLTAFEV WLDHGSEHKK PPEQLPIVLQ VLLSQCHRFR ALVLLGRFLD MGSWAVDLAL
0501: SVGIFPYVLK LLQTTTNELR QILVFIWTKI LALDKSCQID LVKDGGHTYF IRFLDSSGAF PEQRAMAAFV LAVIVDGHRR GQEACLEANL IGVCLGHLEA
0601: SRPSDPQPEP LFLQWLCLCL GKLWEDFMEA QIMGREANAF EKLAPLLSEP QPEVRAAAVF ALGTLLDIGF DSNKSVVEDE FDDDEKIRAE DAIIKSLLDV
0701: VSDGSPLVRA EVAVALARFA FGHKQHLKLA AASYWKPQSS SLLTSLPSIA KFHDPGSATI VSLHMSPLTR ASTDSQPVAR ESRISSSPLG SSGLMQGSPL
0801: SDDSSLHSDS GMMHDSVSNG AVHQPRLLDN AVYSQCVRAM FALAKDPSPR IASLGRRVLS IIGIEQVVAK PSKPTGRPGE AATTSHTPLA GLARSSSWFD
0901: MHAGNLPLSF RTPPVSPPRT NYLSGLRRVC SLEFRPHLLG SPDSGLADPL LGASGSERSL LPLSTIYGWS CGHFSKPLLG GADASQEIAA KREEKEKFAL
1001: EHIAKCQHSS ISKLNNNPIA NWDTRFETGT KTALLHPFSP IVVAADENER IRVWNYEEAT LLNGFDNHDF PDKGISKLCL INELDDSLLL VASCDGSVRI
1101: WKNYATKGKQ KLVTGFSSIQ GHKPGARDLN AVVDWQQQSG YLYASGETST VTLWDLEKEQ LVRSVPSESE CGVTALSASQ VHGGQLAAGF ADGSLRLYDV
1201: RSPEPLVCAT RPHQKVERVV GLSFQPGLDP AKVVSASQAG DIQFLDLRTT RDTYLTIDAH RGSLTALAVH RHAPIIASGS AKQLIKVFSL QGEQLGIIRY
1301: YPSFMAQKIG SVSCLTFHPY QVLLAAGAAD SFVSIYTHDN SQAR

Arabidopsis Description

RAPTOR1RAPTOR1B [Source:UniProtKB/TrEMBL;Acc:A0A178V9S6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.