Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc08g061250.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G08850.1 | Solyc08g061250.2.1 | AT2G26290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400043895 | Potato | cytosol | 97.93 | 98.37 |
| VIT_08s0058g00890.t01 | Wine grape | cytosol | 82.26 | 81.66 |
| KRH40797 | Soybean | nucleus | 80.86 | 79.68 |
| KRH00387 | Soybean | nucleus | 80.27 | 79.56 |
| GSMUA_AchrUn_... | Banana | cytosol | 69.77 | 76.94 |
| Solyc10g076260.1.1 | Tomato | cytosol, nucleus | 30.45 | 76.01 |
| AT3G08850.1 | Thale cress | cytosol | 74.72 | 75.22 |
| Solyc10g076270.1.1 | Tomato | cytosol | 34.0 | 74.68 |
| Bra001342.1-P | Field mustard | plastid | 73.47 | 73.2 |
| CDY00652 | Canola | plastid | 73.39 | 73.12 |
| CDY67456 | Canola | plastid | 73.39 | 73.12 |
| GSMUA_Achr5P14390_001 | Banana | cytosol | 74.58 | 72.43 |
| Bra029726.1-P | Field mustard | cytosol | 71.99 | 72.36 |
| Os11t0109933-01 | Rice | cytosol | 64.08 | 71.18 |
| CDY27967 | Canola | cytosol | 72.06 | 70.65 |
| AT5G01770.1 | Thale cress | cytosol | 69.25 | 70.13 |
| TraesCS5B01G147900.4 | Wheat | plastid | 70.36 | 69.79 |
| TraesCS5D01G143600.3 | Wheat | plastid | 70.36 | 69.79 |
| TraesCS5A01G149200.2 | Wheat | plastid | 70.36 | 69.74 |
| Os12t0110000-01 | Rice | cytosol, plastid | 69.62 | 69.32 |
| CDY64943 | Canola | cytosol | 61.42 | 69.31 |
| OQU82706 | Sorghum | cytosol, plastid | 68.44 | 68.64 |
| EES16504 | Sorghum | plastid | 68.22 | 67.47 |
| KRH40804 | Soybean | cytosol | 6.5 | 64.23 |
| Zm00001d005064_P002 | Maize | plastid | 9.46 | 51.41 |
| GSMUA_AchrUn_... | Banana | cytosol | 7.24 | 46.45 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:2.130.10.10 | MapMan:27.7.1.2 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006464 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008361 | GO:GO:0009056 | GO:GO:0009267 | GO:GO:0009605 | GO:GO:0009719 | GO:GO:0009987 |
| GO:GO:0009991 | GO:GO:0010506 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0019538 | GO:GO:0030307 |
| GO:GO:0030674 | GO:GO:0031929 | GO:GO:0031931 | GO:GO:0040007 | GO:GO:0071230 | GO:GO:0071902 |
| InterPro:IPR001680 | InterPro:IPR011989 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:K4CRV4 | PFAM:PF14538 |
| PRINTS:PR01547 | PFscan:PS50294 | PANTHER:PTHR12848 | PANTHER:PTHR12848:SF16 | InterPro:Raptor | InterPro:Raptor_N |
| SMART:SM00320 | SMART:SM01302 | SUPFAM:SSF48371 | SUPFAM:SSF50978 | EnsemblPlantsGene:Solyc09g014780.2 | EnsemblPlants:Solyc09g014780.2.1 |
| UniParc:UPI000276BB17 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
No Description!
Coordinates
chr9:+:6917876..6935366
Molecular Weight (calculated)
148618.0 Da
IEP (calculated)
6.372
GRAVY (calculated)
-0.085
Length
1353 amino acids
Sequence
(BLAST)
(BLAST)
0001: MALGDLMASR LSQSSAALDE FGNEDGERSN VRDLDTASSS YVGGGVADNA MTTTSMAYFP QTIVLCELRH DRFEDSVPSG PSDTGLVSKW RPRDRMKTGC
0101: VALVLCLNIS VDPPDVIKIS PCARMECWVD PFSMAPQKAL ETIGRTLNQQ YERWQPRAKY KISLDPTVDE IKKLCTTCRK YAKSERVLFH YNGHGVPKPT
0201: ANGEIWLFNK SYTQYIPLPI SDLDSWLKTP SIYVFDCSAA GMIVNAFIEL QDWTASGSSA TSTRDCILLA ACEAHETLPQ SSEFPADVFT SCLTTPIKMA
0301: LRWFCTRSLL HESLDYSLID RIPGRQTDRK TLLGELNWIF TAVTDTIAWN VLPHDLFQRL FRQDLLVASL FRNFLLAERI MRSANCSPIS YPMLPPTHQH
0401: HMWDAWDMAA EICLSQLPTL VEDPNAEFQP SPFFTEQLTA FEVWLDHGSK DKKPPEQLPI VLQVLLSQCH RFRALVLLGR FLDMGPWAVD LALSVGIFPY
0501: VLKLLQTTTP ELRQILVFIW TKILALDKSC QVDLVKDGGH TYFIKFLDSV EAYPEQRAMA AFVLAVIVDG HRRGQEACTE AGLIHVCLKH LQGSTPNEAQ
0601: TEPLFLQWLC LCLGKLWEDF TEAQVLGLQA DAPAIFAPLL SEPQPEVRAA ATFALGTLLD VGFDSARDGV GGDEDCDDEE KVRTEVSIIK SLLSVASDGS
0701: PLVRVEVAVA LARFAFGHNK HLKSVAAAYW KPQANSLLTS LPSFAVKSSG SGYTTPTHSI SHGSRVPSPI APLLRVGGDS QSIARDGRVS TSSPLATPGV
0801: IHGSPLSDDS SQLSDPGTLN DAVTNGVVNH TRSRPLDNAL YSQCVLAMCA LAKDPSPRIA GLGRRVLSII GIEQVVAKSV KSTGESTTVP NTGYAGLARS
0901: SSWFDMNGGH LPLTFRTPPV SPPRPSYLTG MRRVCSLEFR PHLMHSQDSG LADPLLGSAG SSGPSERSFL PQSTIYNWSC GHFSKPLLTA ADDSEEMVDR
1001: REKKEKMALD LIAKCQHSSV SKLHNQIASW DTKFETGTKT ALLQPFSPIV IAADESERIR IWNYEEATLL NSFDNHSYPD KGISKLCLVN ELDESLLLVA
1101: SSDGNIRIWK DYTVRGRQRL VSAFSSIQGH RPGVRSVSAV VDWQQQSGYL FSSAEVSSIM AWDLDKEQLV NTIPTSSDCS ISALSASQVH AGHFAAGFVD
1201: GCVKLFDIRM PELLVCASRP HTQRVERVVG IGFQPGLEPA KIVSASQAGD IQFLDMRNLK EAYLTIDAHR GSLTALAVHR HAPLIASGSA KQLIKVFNLE
1301: GEQLGTIRYL STFMAQKIGS VRCLTFHPYQ VLLAAGAADS CVSIYADEIT PTR
0101: VALVLCLNIS VDPPDVIKIS PCARMECWVD PFSMAPQKAL ETIGRTLNQQ YERWQPRAKY KISLDPTVDE IKKLCTTCRK YAKSERVLFH YNGHGVPKPT
0201: ANGEIWLFNK SYTQYIPLPI SDLDSWLKTP SIYVFDCSAA GMIVNAFIEL QDWTASGSSA TSTRDCILLA ACEAHETLPQ SSEFPADVFT SCLTTPIKMA
0301: LRWFCTRSLL HESLDYSLID RIPGRQTDRK TLLGELNWIF TAVTDTIAWN VLPHDLFQRL FRQDLLVASL FRNFLLAERI MRSANCSPIS YPMLPPTHQH
0401: HMWDAWDMAA EICLSQLPTL VEDPNAEFQP SPFFTEQLTA FEVWLDHGSK DKKPPEQLPI VLQVLLSQCH RFRALVLLGR FLDMGPWAVD LALSVGIFPY
0501: VLKLLQTTTP ELRQILVFIW TKILALDKSC QVDLVKDGGH TYFIKFLDSV EAYPEQRAMA AFVLAVIVDG HRRGQEACTE AGLIHVCLKH LQGSTPNEAQ
0601: TEPLFLQWLC LCLGKLWEDF TEAQVLGLQA DAPAIFAPLL SEPQPEVRAA ATFALGTLLD VGFDSARDGV GGDEDCDDEE KVRTEVSIIK SLLSVASDGS
0701: PLVRVEVAVA LARFAFGHNK HLKSVAAAYW KPQANSLLTS LPSFAVKSSG SGYTTPTHSI SHGSRVPSPI APLLRVGGDS QSIARDGRVS TSSPLATPGV
0801: IHGSPLSDDS SQLSDPGTLN DAVTNGVVNH TRSRPLDNAL YSQCVLAMCA LAKDPSPRIA GLGRRVLSII GIEQVVAKSV KSTGESTTVP NTGYAGLARS
0901: SSWFDMNGGH LPLTFRTPPV SPPRPSYLTG MRRVCSLEFR PHLMHSQDSG LADPLLGSAG SSGPSERSFL PQSTIYNWSC GHFSKPLLTA ADDSEEMVDR
1001: REKKEKMALD LIAKCQHSSV SKLHNQIASW DTKFETGTKT ALLQPFSPIV IAADESERIR IWNYEEATLL NSFDNHSYPD KGISKLCLVN ELDESLLLVA
1101: SSDGNIRIWK DYTVRGRQRL VSAFSSIQGH RPGVRSVSAV VDWQQQSGYL FSSAEVSSIM AWDLDKEQLV NTIPTSSDCS ISALSASQVH AGHFAAGFVD
1201: GCVKLFDIRM PELLVCASRP HTQRVERVVG IGFQPGLEPA KIVSASQAGD IQFLDMRNLK EAYLTIDAHR GSLTALAVHR HAPLIASGSA KQLIKVFNLE
1301: GEQLGTIRYL STFMAQKIGS VRCLTFHPYQ VLLAAGAADS CVSIYADEIT PTR
0001: MALGDLMVSR FSQSSVSLVS NHRYDEDCVS SHDDGDSRRK DSEAKSSSSY GNGTTEGAAT ATSMAYLPQT IVLCELRHDA SEASAPLGTS EIVLVPKWRL
0101: KERMKTGCVA LVLCLNITVD PPDVIKISPC ARIEAWIDPF SMAPPKALET IGKNLSTQYE RWQPRARYKV QLDPTVDEVR KLCLTCRKYA KTERVLFHYN
0201: GHGVPKPTAN GEIWVFNKSY TQYIPLPISE LDSWLKTPSI YVFDCSAARM ILNAFAELHD WGSSGSSGSS RDCILLAACD VHETLPQSVE FPADVFTSCL
0301: TTPIKMALKW FCRRSLLKEI IDESLIDRIP GRQNDRKTLL GELNWIFTAV TDTIAWNVLP HELFQRLFRQ DLLVASLFRN FLLAERIMRS ANCNPISHPM
0401: LPPTHQHHMW DAWDMAAEIC LSQLPQLVLD PSTEFQPSPF FTEQLTAFEV WLDHGSEHKK PPEQLPIVLQ VLLSQCHRFR ALVLLGRFLD MGSWAVDLAL
0501: SVGIFPYVLK LLQTTTNELR QILVFIWTKI LALDKSCQID LVKDGGHTYF IRFLDSSGAF PEQRAMAAFV LAVIVDGHRR GQEACLEANL IGVCLGHLEA
0601: SRPSDPQPEP LFLQWLCLCL GKLWEDFMEA QIMGREANAF EKLAPLLSEP QPEVRAAAVF ALGTLLDIGF DSNKSVVEDE FDDDEKIRAE DAIIKSLLDV
0701: VSDGSPLVRA EVAVALARFA FGHKQHLKLA AASYWKPQSS SLLTSLPSIA KFHDPGSATI VSLHMSPLTR ASTDSQPVAR ESRISSSPLG SSGLMQGSPL
0801: SDDSSLHSDS GMMHDSVSNG AVHQPRLLDN AVYSQCVRAM FALAKDPSPR IASLGRRVLS IIGIEQVVAK PSKPTGRPGE AATTSHTPLA GLARSSSWFD
0901: MHAGNLPLSF RTPPVSPPRT NYLSGLRRVC SLEFRPHLLG SPDSGLADPL LGASGSERSL LPLSTIYGWS CGHFSKPLLG GADASQEIAA KREEKEKFAL
1001: EHIAKCQHSS ISKLNNNPIA NWDTRFETGT KTALLHPFSP IVVAADENER IRVWNYEEAT LLNGFDNHDF PDKGISKLCL INELDDSLLL VASCDGSVRI
1101: WKNYATKGKQ KLVTGFSSIQ GHKPGARDLN AVVDWQQQSG YLYASGETST VTLWDLEKEQ LVRSVPSESE CGVTALSASQ VHGGQLAAGF ADGSLRLYDV
1201: RSPEPLVCAT RPHQKVERVV GLSFQPGLDP AKVVSASQAG DIQFLDLRTT RDTYLTIDAH RGSLTALAVH RHAPIIASGS AKQLIKVFSL QGEQLGIIRY
1301: YPSFMAQKIG SVSCLTFHPY QVLLAAGAAD SFVSIYTHDN SQAR
0101: KERMKTGCVA LVLCLNITVD PPDVIKISPC ARIEAWIDPF SMAPPKALET IGKNLSTQYE RWQPRARYKV QLDPTVDEVR KLCLTCRKYA KTERVLFHYN
0201: GHGVPKPTAN GEIWVFNKSY TQYIPLPISE LDSWLKTPSI YVFDCSAARM ILNAFAELHD WGSSGSSGSS RDCILLAACD VHETLPQSVE FPADVFTSCL
0301: TTPIKMALKW FCRRSLLKEI IDESLIDRIP GRQNDRKTLL GELNWIFTAV TDTIAWNVLP HELFQRLFRQ DLLVASLFRN FLLAERIMRS ANCNPISHPM
0401: LPPTHQHHMW DAWDMAAEIC LSQLPQLVLD PSTEFQPSPF FTEQLTAFEV WLDHGSEHKK PPEQLPIVLQ VLLSQCHRFR ALVLLGRFLD MGSWAVDLAL
0501: SVGIFPYVLK LLQTTTNELR QILVFIWTKI LALDKSCQID LVKDGGHTYF IRFLDSSGAF PEQRAMAAFV LAVIVDGHRR GQEACLEANL IGVCLGHLEA
0601: SRPSDPQPEP LFLQWLCLCL GKLWEDFMEA QIMGREANAF EKLAPLLSEP QPEVRAAAVF ALGTLLDIGF DSNKSVVEDE FDDDEKIRAE DAIIKSLLDV
0701: VSDGSPLVRA EVAVALARFA FGHKQHLKLA AASYWKPQSS SLLTSLPSIA KFHDPGSATI VSLHMSPLTR ASTDSQPVAR ESRISSSPLG SSGLMQGSPL
0801: SDDSSLHSDS GMMHDSVSNG AVHQPRLLDN AVYSQCVRAM FALAKDPSPR IASLGRRVLS IIGIEQVVAK PSKPTGRPGE AATTSHTPLA GLARSSSWFD
0901: MHAGNLPLSF RTPPVSPPRT NYLSGLRRVC SLEFRPHLLG SPDSGLADPL LGASGSERSL LPLSTIYGWS CGHFSKPLLG GADASQEIAA KREEKEKFAL
1001: EHIAKCQHSS ISKLNNNPIA NWDTRFETGT KTALLHPFSP IVVAADENER IRVWNYEEAT LLNGFDNHDF PDKGISKLCL INELDDSLLL VASCDGSVRI
1101: WKNYATKGKQ KLVTGFSSIQ GHKPGARDLN AVVDWQQQSG YLYASGETST VTLWDLEKEQ LVRSVPSESE CGVTALSASQ VHGGQLAAGF ADGSLRLYDV
1201: RSPEPLVCAT RPHQKVERVV GLSFQPGLDP AKVVSASQAG DIQFLDLRTT RDTYLTIDAH RGSLTALAVH RHAPIIASGS AKQLIKVFSL QGEQLGIIRY
1301: YPSFMAQKIG SVSCLTFHPY QVLLAAGAAD SFVSIYTHDN SQAR
Arabidopsis Description
RAPTOR1RAPTOR1B [Source:UniProtKB/TrEMBL;Acc:A0A178V9S6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.